Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.9e-311 1071.6 543 100.0
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.9e-230 802.0 521 76.4
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 8.4e-230 800.4 537 74.7
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.1e-229 800.0 525 74.9
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.1e-218 763.5 529 71.8
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 9.0e-216 753.8 575 67.1
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 4.5e-215 751.5 530 72.1
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 7.6e-215 750.7 533 72.0
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.2e-214 749.2 541 70.1
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.9e-214 748.8 531 71.4
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.9e-214 748.8 530 71.1
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 6.4e-214 747.7 536 71.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 2.1e-212 742.7 533 71.1
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 7.9e-212 740.7 522 71.3
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.3e-211 739.2 530 71.1
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.3e-211 739.2 533 70.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 5.1e-211 738.0 534 69.9
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.3e-210 735.3 535 69.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 9.6e-210 733.8 532 69.7
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.8e-209 732.3 534 68.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.8e-209 732.3 526 69.8
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 6.2e-209 731.1 541 70.4
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 8.1e-209 730.7 530 69.8
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.1e-208 730.3 533 69.6
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.1e-208 730.3 526 69.0
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.4e-208 729.2 530 70.2
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 9.0e-208 727.2 531 69.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.6e-207 725.7 531 69.7
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.0e-206 723.8 530 70.6
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.7e-206 723.0 530 70.6
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.9e-205 719.5 548 67.5
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 4.6e-204 714.9 530 69.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 7.9e-204 714.1 553 65.8
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.8e-203 713.0 534 67.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.9e-203 711.8 539 68.3
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 3.3e-202 708.8 551 66.4
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 4.3e-202 708.4 530 67.5
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 4.3e-202 708.4 522 69.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.1e-201 706.1 549 67.2
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 6.2e-201 704.5 542 66.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 8.2e-201 704.1 544 67.5
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.1e-200 703.7 524 68.7
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.4e-200 702.6 575 64.9
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 5.3e-200 701.4 535 65.4
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 5.3e-200 701.4 551 65.9
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.4e-199 698.7 528 65.9
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 7.6e-199 697.6 531 65.7
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 7.6e-199 697.6 530 67.5
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.3e-198 696.8 531 67.2
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 8.4e-198 694.1 531 67.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.9e-197 693.0 522 66.7
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 1.9e-197 693.0 524 67.7
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.1e-196 689.5 522 67.4
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 2.7e-196 689.1 531 66.1
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.0e-195 687.2 527 64.9
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.9e-195 685.3 528 65.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.2e-193 679.5 533 64.9
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.7e-193 678.7 528 64.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 4.8e-193 678.3 528 64.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 4.8e-193 678.3 532 64.7
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 6.3e-193 677.9 520 66.0
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.5e-191 673.3 528 64.2
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 7.7e-191 671.0 527 64.1
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.0e-190 670.6 531 64.0
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 2.9e-190 669.1 530 65.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.0e-187 660.6 531 62.7
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.0e-187 660.6 528 63.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.3e-186 655.6 467 71.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 3.7e-185 652.1 543 63.9
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.2e-185 651.0 581 60.6
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 9.1e-184 647.5 496 67.9
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.7e-182 643.3 519 64.0
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.1e-180 636.3 532 63.7
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 6.1e-180 634.8 554 59.7
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 4.1e-176 622.1 551 59.5
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 7.7e-175 617.8 530 61.5
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.5e-174 614.8 498 63.1
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 5.5e-173 611.7 530 60.8
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.7e-172 609.4 546 57.7
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.1e-170 604.0 530 60.0
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.1e-170 604.0 448 68.8
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 2.6e-170 602.8 527 59.0
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.4e-170 601.3 546 57.3
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.2e-167 594.0 529 58.8
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 8.5e-166 587.8 566 56.2
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.5e-165 587.0 437 67.3
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 5.4e-160 568.5 530 57.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.7e-156 555.4 536 56.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.3e-150 537.3 536 55.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.1e-148 528.5 430 64.0
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.7e-145 520.4 395 65.6
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.0e-143 513.5 407 64.4
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 7.3e-141 505.0 566 51.2
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.2e-140 504.2 537 50.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.9e-137 492.3 541 50.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 2.4e-136 490.0 521 49.5
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.1e-120 438.0 500 49.2
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.6e-116 424.1 354 62.7
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 6.2e-116 422.2 354 62.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.9e-110 402.9 544 42.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.5e-109 401.0 288 71.5
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.1e-104 384.8 444 47.5
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.4e-99 367.9 287 64.5
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.8e-94 350.9 548 39.4
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 6.9e-83 312.4 308 55.2
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.4e-82 310.1 386 45.3
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.2e-76 290.8 204 74.0
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 5.9e-74 282.7 568 34.3
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 9.7e-69 265.4 554 32.9
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.0e-62 243.8 212 59.0
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 5.9e-58 229.6 183 67.2
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 2.2e-57 227.6 531 31.3
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.1e-53 215.3 152 68.4
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 3.5e-50 203.8 135 74.1
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 5.9e-50 203.0 168 57.7
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.8e-49 200.3 128 75.8
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.2e-44 184.5 135 69.6
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 3.7e-36 157.1 123 61.0
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.1e-35 153.7 113 68.1
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 8.6e-33 146.0 85 85.9
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.1e-31 139.8 99 72.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.6e-26 125.2 115 58.3
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.3e-24 117.1 451 27.1
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 4.6e-18 97.1 195 34.4
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.5e-16 92.0 72 65.3
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 5.6e-16 90.1 71 64.8
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.1e-14 85.9 71 62.0
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.1e-14 85.9 71 62.0
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.0e-14 84.0 75 54.7
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 6.8e-14 83.2 114 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.1e-11 73.9 270 28.9
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 9.2e-11 72.8 113 41.6
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.1e-10 71.6 73 52.1
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 8.6e-09 66.2 271 27.7
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 3.6e-07 60.8 49 57.1
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 4.7e-07 60.5 66 45.5
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-06 59.3 59 54.2
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.1e-06 59.3 87 43.7
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-06 58.5 35 77.1
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 2.3e-06 58.2 138 37.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 2.3e-06 58.2 94 38.3
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 3.1e-06 57.8 73 45.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 3.1e-06 57.8 94 38.3
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 3.1e-06 57.8 95 37.9
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 4.0e-06 57.4 73 43.8
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 4.0e-06 57.4 98 37.8
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 5.2e-06 57.0 95 37.9
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 6.8e-06 56.6 80 42.5
arahy.Tifrunner.gnm1.ann1.69Z87Y Arachis hypogaea HOM05D005625 ORTHO05D007564 6.8e-06 56.6 32 84.4
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 6.8e-06 56.6 73 45.2
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 6.8e-06 56.6 94 37.2
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 8.9e-06 56.2 95 38.9
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 8.9e-06 56.2 60 50.0


User provided reference genes

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