Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 2361.6 1099 100.0
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1833.9 1104 76.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1832.0 1099 75.6
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1805.0 1112 74.2
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1786.9 1096 74.1
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1109 71.4
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1754.2 1112 72.1
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1096 71.5
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1748.8 1096 71.6
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1108 70.8
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1746.5 1096 72.4
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1746.1 1096 71.5
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1745.3 1096 71.7
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1739.9 1096 72.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1739.9 1108 70.7
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1738.4 1107 70.2
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1729.5 1095 71.5
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1728.4 1114 71.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1719.1 1119 69.6
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1718.7 1096 70.7
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1706.8 1106 70.2
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1704.5 1078 72.4
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1699.5 1112 69.8
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1693.7 1088 69.9
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1688.3 1113 67.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1102 69.0
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1686.0 1113 68.2
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1686.0 1114 68.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1115 69.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1684.1 1096 69.7
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1095 70.1
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1093 69.5
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1110 68.3
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1679.5 1111 68.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1679.1 1096 68.8
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1677.9 1097 68.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1088 69.4
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1090 69.4
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1090 69.1
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1095 68.8
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1673.7 1106 69.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1671.8 1067 71.1
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1669.1 1111 68.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1666.7 1105 68.1
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1090 69.1
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1103 68.4
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1666.0 1090 68.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1109 67.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1662.9 1097 68.0
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1662.5 1106 68.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1660.6 1123 68.0
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1098 68.6
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1120 67.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1098 67.9
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1657.1 1091 69.4
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1656.3 1086 68.0
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1654.4 1095 68.7
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1652.9 1081 69.0
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1651.7 1087 68.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1650.2 1083 69.0
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1650.2 1096 67.7
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1647.9 1087 67.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1644.0 1108 67.8
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1643.6 1115 66.9
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1642.9 1106 67.9
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1639.4 1061 69.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1637.9 1116 66.4
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1635.5 1089 67.8
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1635.5 1048 70.9
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1629.4 1075 69.3
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1625.5 1207 63.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1622.8 1097 67.5
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1617.1 1118 65.3
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1616.3 1097 66.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1614.4 1093 67.3
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1612.0 1097 66.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1611.3 1097 66.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1583.5 1089 66.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1566.2 1122 63.4
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1560.0 987 72.4
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1557.7 1133 64.0
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1543.9 1119 63.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1536.9 1109 62.6
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1468.8 1078 61.8
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1464.9 1157 60.1
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1456.4 989 68.6
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1399.8 914 70.4
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1378.6 897 70.7
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1312.7 1097 56.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1306.6 1137 53.6
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1267.7 1036 58.3
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1256.9 1116 53.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1239.2 830 69.3
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1218.4 829 68.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1192.2 749 72.2
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1166.4 1130 50.6
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1154.0 753 70.5
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1147.9 741 71.1
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1082.4 652 73.8
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 9.1e-308 1060.4 1132 47.2
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.5e-283 978.8 688 65.4
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 2.3e-263 912.9 677 63.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.1e-252 874.8 526 76.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.7e-250 870.2 526 76.0
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.1e-228 797.7 498 73.5
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.1e-211 740.3 570 60.4
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.4e-159 568.2 1434 29.6
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.6e-150 538.1 614 46.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.3e-148 530.4 383 63.7
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 2.0e-129 468.0 284 72.9
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.2e-118 432.2 240 78.8
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 5.1e-117 426.8 592 40.2
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.5e-105 387.1 274 66.4
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 3.2e-87 327.8 827 29.6
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 7.9e-86 323.2 194 72.2
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.0e-85 322.8 259 56.4
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 6.3e-83 313.5 174 81.6
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.9e-79 302.0 201 66.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.0e-76 292.0 208 65.9
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 5.7e-68 263.8 156 73.1
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.8e-59 235.0 208 52.4
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.9e-56 224.9 165 59.4
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 8.5e-56 223.4 163 65.0
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 4.0e-45 188.0 108 74.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 7.0e-42 177.2 124 62.9
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 4.7e-38 164.5 198 45.5
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-36 158.7 113 60.2
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 5.8e-36 157.5 175 47.4
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 6.4e-35 154.1 139 48.9
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 5.4e-34 151.0 144 52.1
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 9.2e-34 150.2 142 52.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.0e-33 149.1 130 57.7
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.6e-33 147.9 82 75.6
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.2e-30 139.8 89 69.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.2e-28 133.3 156 46.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.3e-27 129.8 75 68.0
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.5e-23 116.3 141 46.8
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.3e-23 115.2 53 90.6
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.1e-22 112.5 66 71.2
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 8.4e-19 100.5 95 51.6
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 5.4e-18 97.8 86 57.0
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 5.4e-18 97.8 117 47.9
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.6e-17 96.3 94 48.9
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 6.0e-17 94.4 45 84.4
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 6.0e-17 94.4 45 84.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.9e-16 91.7 45 84.4
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 8.6e-16 90.5 100 45.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.1e-15 90.1 88 50.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 3.3e-15 88.6 45 80.0
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 4.4e-12 78.2 400 23.5
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 7.6e-12 77.4 50 68.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 6.4e-11 74.3 136 36.0
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 3.6e-06 58.5 27 85.2
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 3.6e-06 58.5 90 37.8


User provided reference genes

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