Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 9947.8 5083 100.0
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 7260.6 5118 73.5
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 7136.2 5141 72.0
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 7105.4 5131 71.8
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 7074.2 5124 71.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 6895.4 5117 70.6
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 6828.0 5144 68.3
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 6826.9 5141 68.5
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 6809.9 5191 68.3
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6801.5 5131 68.7
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6798.4 5131 68.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 6792.2 5115 68.5
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 6720.2 5156 67.7
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 6716.3 5007 69.1
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6710.5 5137 67.6
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 6696.3 5116 67.9
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6692.4 5126 67.8
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 6692.1 5117 67.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6690.5 5117 67.8
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 6680.5 5140 67.5
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 6672.4 5138 67.3
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 6662.4 5144 67.5
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 6658.9 5116 67.6
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 6641.6 5123 67.4
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 6587.7 5198 66.2
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 6576.9 5136 66.4
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 6565.7 5138 66.8
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 6505.6 4862 69.2
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 6472.5 5199 65.1
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6471.3 5144 65.7
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6466.3 5107 65.9
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 6453.2 5134 65.2
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6445.5 5114 66.0
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 6439.4 5140 65.1
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 6425.5 5128 65.2
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 6424.0 5124 65.1
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 6422.8 5130 64.9
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6420.9 4867 68.0
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 6416.3 5145 65.2
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 6415.5 5146 65.2
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 6415.5 5136 65.2
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 6395.5 5134 65.0
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 6387.0 5144 64.8
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 6381.6 5132 64.9
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 6368.1 5134 64.5
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 6356.9 5129 64.9
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 6356.2 5134 64.6
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 6351.9 5136 64.7
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 6346.9 5108 64.8
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 6338.8 5130 64.4
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6325.0 5141 64.1
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 6318.4 5124 64.9
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6317.6 5141 64.0
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 6277.6 5137 64.4
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6249.5 4740 67.8
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 6189.4 5125 63.1
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 6185.5 5125 62.9
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 6178.6 5105 63.4
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 6168.6 5125 62.8
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 6161.3 5143 63.0
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 6161.3 5133 62.7
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 6158.6 4853 65.9
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 6153.5 5108 62.7
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 6143.1 4857 65.9
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 6138.1 5126 62.6
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 6134.3 4856 65.4
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 6133.5 5130 62.7
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 6130.4 5132 62.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 6129.7 5125 62.4
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6124.3 4850 65.4
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6124.3 4850 65.4
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 6106.2 5148 62.1
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 6089.2 5128 62.2
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 6060.3 4920 63.8
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 5979.8 4854 64.9
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 5933.2 4143 73.6
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 5869.7 5149 60.9
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 5834.2 4866 62.9
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 5608.1 4982 61.2
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5581.9 5154 58.2
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 5572.3 5146 58.3
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5501.8 5149 57.6
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 5288.8 5173 55.5
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 5268.4 4908 57.4
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 4931.3 3706 69.9
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4745.3 3215 74.7
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 4577.7 5303 49.3
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 4408.6 3835 60.2
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4404.0 5298 48.5
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4278.4 5040 48.5
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 4196.4 4820 49.9
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 3969.5 4494 50.8
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3930.9 2541 78.6
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3919.4 2541 78.5
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 3833.1 2640 74.1
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 3675.2 2425 77.3
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 3579.3 3355 56.9
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3462.9 2308 76.4
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 3150.9 2056 78.6
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3116.3 2995 55.9
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3057.7 2244 71.2
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 3035.0 6287 34.9
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2964.9 2450 63.3
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2959.1 2042 74.3
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 2936.7 2165 70.3
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2925.6 2777 56.1
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2904.8 1932 76.2
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2832.0 2886 52.7
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2645.2 2623 54.2
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2550.4 2590 54.5
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2398.6 2725 49.5
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2305.4 2451 52.1
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 2285.8 1506 76.5
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1920.6 2092 50.7
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1898.2 2445 45.3
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1788.9 1921 50.9
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1637.9 2374 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1569.7 2872 37.2
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1459.1 1039 73.6
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1276.5 1731 45.4
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1266.9 1353 54.8
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 1224.9 734 84.9
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1219.9 1339 53.4
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 0.0e+00 1134.0 1419 43.5
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 2.5e-307 1061.2 872 63.1
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 4.5e-261 907.5 654 71.6
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 4.6e-229 801.2 649 64.1
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 5.6e-227 794.3 4569 23.9
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 2.9e-191 675.6 840 50.6
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 4.3e-187 661.8 535 66.0
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 3.8e-175 622.1 966 39.0
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 5.0e-167 595.1 389 76.1
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 5.8e-115 422.2 829 38.1
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 5.1e-103 382.5 262 71.8
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 5.9e-83 315.8 275 60.7
PGSC0003DMG402001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 6.7e-71 275.8 276 55.4
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.4e-62 246.5 191 65.4
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 2.8e-61 243.8 229 56.3
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.1e-60 240.0 190 64.7
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.1e-60 240.0 191 65.4
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 5.9e-59 236.1 190 64.7
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 1.0e-55 225.3 275 48.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 2.6e-54 220.7 184 63.0
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.4e-52 214.9 451 33.0
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 1.8e-52 214.5 155 72.3
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.2e-50 207.6 192 59.9
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 4.0e-47 196.8 142 70.4
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 4.8e-45 189.9 649 27.4
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 3.2e-41 177.2 330 40.3
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 9.8e-38 165.6 114 68.4
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 5.0e-34 153.3 111 68.5
Sabra11G0092200 Salix brachista HOM05D003926 ORTHO05D005273 8.0e-32 146.0 237 43.0
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 7.0e-28 132.9 136 56.6
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 7.8e-27 129.4 304 33.2
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 2.0e-22 114.8 106 67.0
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 4.9e-21 110.2 201 36.8
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.1e-20 109.0 114 60.5
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 3.3e-17 97.4 109 50.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 9.5e-17 95.9 191 37.7
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 5.2e-15 90.1 255 29.4
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 5.2e-15 90.1 122 49.2
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 6.8e-15 89.7 56 78.6
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 8.9e-15 89.4 79 46.8
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 4.9e-13 83.6 128 39.8
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 1.4e-12 82.0 108 48.1
Hma1.2p1_0587F.1_g184120 Hydrangea macrophylla HOM05D003926 ORTHO05D005273 1.9e-12 81.6 53 69.8
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 3.2e-12 80.9 115 46.1
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 4.6e-11 77.0 142 40.8
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 6.6e-10 73.2 285 26.0
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 1.5e-09 72.0 74 47.3
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 1.5e-09 72.0 126 38.9
Psat7g160960 Pisum sativum HOM05D001399 ORTHO05D002785 1.9e-09 71.6 82 45.1
ATR0585G095 Amborella trichopoda HOM05D003926 ORTHO05D005273 3.3e-09 70.9 55 58.2
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 9.5e-09 69.3 55 56.4
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 1.2e-08 68.9 139 35.3
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 1.6e-08 68.6 57 59.6
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 4.7e-08 67.0 115 35.7
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 8.1e-08 66.2 147 34.0
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.4e-07 65.5 69 40.6
Psat2g102800 Pisum sativum HOM05D038693 ORTHO05D320111 4.0e-07 63.9 138 34.8
VMungo0540G1361 Vigna mungo HOM05D003926 ORTHO05D005273 8.9e-07 62.8 69 50.7
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 5.8e-06 60.1 62 45.2
Psat3g091240 Pisum sativum HOM05D000942 ORTHO05D000918 9.9e-06 59.3 75 46.7


User provided reference genes

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