Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.5e-294 1015.4 498 100.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.2e-240 833.6 497 82.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.4e-239 832.0 495 81.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.1e-239 831.2 495 82.2
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 5.3e-239 830.9 494 81.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.0e-238 828.9 497 81.7
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.0e-237 826.6 494 81.2
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.2e-237 825.5 494 81.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.9e-237 825.1 489 82.2
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.8e-237 824.7 495 81.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.0e-237 824.3 497 80.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 8.5e-237 823.5 494 80.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.9e-236 822.4 493 80.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 4.2e-236 821.2 494 81.0
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 7.2e-236 820.5 494 81.4
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 9.4e-236 820.1 493 80.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.4e-236 820.1 494 80.8
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.4e-236 820.1 495 80.0
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.2e-235 819.7 497 81.5
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.1e-235 818.9 494 80.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.7e-235 818.5 495 79.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.6e-235 817.8 494 80.4
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 6.1e-235 817.4 489 80.8
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 6.1e-235 817.4 493 79.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 7.9e-235 817.0 497 80.5
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 80.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.0e-234 816.6 495 80.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-234 816.2 493 80.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.4e-234 816.2 495 79.8
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-234 815.8 493 80.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.0e-234 815.1 494 80.0
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.0e-234 815.1 496 80.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.9e-234 814.7 535 77.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 6.7e-234 813.9 494 80.0
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.5e-233 812.8 494 79.8
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 5.7e-233 810.8 495 79.4
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.7e-233 810.8 506 78.1
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 5.7e-233 810.8 494 79.1
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.7e-232 809.3 495 80.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.8e-232 807.7 497 79.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 8.2e-232 807.0 487 80.1
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.2e-232 807.0 493 79.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.2e-232 807.0 494 78.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 8.2e-232 807.0 494 79.1
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.1e-231 806.6 497 80.5
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.1e-231 806.6 494 79.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-231 806.6 497 78.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.4e-231 806.2 495 80.2
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.4e-231 805.4 493 79.1
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.4e-231 805.4 492 79.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 3.1e-231 805.1 494 79.4
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.1e-231 805.1 494 78.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.1e-231 805.1 494 79.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 9.1e-231 803.5 494 80.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 9.1e-231 803.5 494 80.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 9.1e-231 803.5 498 79.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-230 802.7 494 79.1
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 2.6e-230 802.0 499 79.0
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.6e-230 802.0 500 78.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.4e-230 801.6 493 78.7
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 4.5e-230 801.2 494 78.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.5e-230 801.2 494 78.9
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 5.9e-230 800.8 499 79.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.7e-230 800.4 494 78.1
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.2e-229 798.9 510 76.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.2e-229 798.9 494 76.9
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.9e-229 798.5 494 78.3
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 6.5e-229 797.3 496 78.4
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.1e-228 796.6 494 79.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.9e-228 795.8 496 78.6
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.5e-228 795.4 494 78.3
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.5e-228 795.4 494 79.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.2e-228 795.0 494 76.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 7.2e-228 793.9 528 75.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 9.4e-228 793.5 494 78.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 9.4e-228 793.5 490 78.2
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-227 793.1 486 79.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.2e-227 793.1 494 77.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.7e-227 791.2 492 78.0
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.7e-227 791.2 494 79.1
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 6.1e-227 790.8 490 78.4
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 7.9e-227 790.4 497 77.5
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 7.9e-227 790.4 491 78.0
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.4e-226 789.6 493 77.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.3e-226 788.9 494 77.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-225 786.6 486 78.6
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-225 786.6 489 78.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.1e-225 786.6 488 78.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.5e-225 786.2 478 80.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.5e-225 786.2 487 78.0
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.6e-225 785.4 491 77.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 2.6e-225 785.4 481 79.6
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.4e-225 784.6 494 78.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 9.7e-225 783.5 498 77.1
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.3e-224 783.1 494 77.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-224 783.1 500 76.6
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.3e-224 780.8 492 77.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-223 780.0 489 77.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-223 779.2 492 76.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.2e-220 768.5 488 77.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.2e-219 766.5 485 77.3
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.0e-219 763.8 490 76.5
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.5e-212 742.3 448 79.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 4.2e-212 741.5 515 71.8
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 4.7e-211 738.0 441 81.4
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.3e-210 735.7 492 74.0
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.4e-209 731.9 439 81.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-206 723.4 445 78.9
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 7.7e-206 720.7 447 78.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.7e-203 711.4 440 79.3
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.4e-201 705.3 443 78.3
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.7e-197 693.0 491 69.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.4e-194 683.3 483 70.2
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 4.0e-194 681.8 389 85.1
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 7.0e-191 671.0 482 66.8
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.3e-188 661.8 496 69.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.2e-182 643.7 403 76.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-181 640.2 472 70.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.8e-178 627.9 497 66.2
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 8.3e-176 620.9 383 79.4
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.9e-172 609.8 507 60.9
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.5e-172 607.4 384 78.1
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.6e-166 588.6 391 75.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 8.6e-165 584.3 501 61.9
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 9.3e-159 564.3 461 67.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.3e-155 553.9 383 73.1
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.2e-152 543.1 346 76.6
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 4.9e-144 515.4 529 51.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-138 495.0 267 90.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.6e-121 439.9 610 43.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-116 424.5 245 84.1
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.8e-112 409.5 239 81.2
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-106 390.2 483 48.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.5e-105 386.0 228 81.6
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.1e-102 377.1 238 74.8
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 4.7e-102 375.9 301 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.0e-101 374.8 431 49.9
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.1e-98 363.2 252 69.4
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.2e-95 353.2 303 65.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.0e-90 335.5 243 69.1
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-86 323.6 310 56.1
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 4.1e-82 309.7 237 64.6
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 8.0e-78 295.4 254 63.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.5e-57 226.9 260 50.4
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.2e-54 218.4 159 67.9
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 7.8e-49 199.1 148 63.5
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 6.6e-48 196.1 300 42.3
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.1e-46 189.1 105 85.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.2e-44 185.3 215 52.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.9e-43 179.9 104 81.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 8.4e-43 179.1 96 88.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.4e-42 177.6 145 62.1
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 6.4e-35 152.9 123 62.6
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.5e-31 141.0 75 88.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 4.8e-30 136.7 162 48.8
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.4e-29 135.2 129 53.5
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 5.8e-28 129.8 79 74.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 5.5e-26 123.2 85 70.6
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.4e-18 98.6 93 57.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.1e-14 84.7 61 72.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 4.8e-14 83.6 73 58.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.2e-11 74.7 47 70.2
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.5e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 1.6e-06 58.5 38 76.3


User provided reference genes

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