Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 1.4e-133 479.6 231 100.0
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 7.5e-79 297.7 229 61.1
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.3e-78 297.0 228 61.0
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 2.8e-78 295.8 228 59.2
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 4.9e-78 295.0 215 62.8
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.9e-78 295.0 228 60.1
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.4e-77 293.5 226 60.2
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.4e-77 293.5 228 59.6
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.8e-77 293.1 225 60.4
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 1.8e-77 293.1 215 61.9
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 3.1e-77 292.4 228 59.2
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 9.2e-77 290.8 228 61.0
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.2e-76 290.4 228 60.5
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 2.7e-76 289.3 228 60.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 5.9e-76 288.1 228 58.3
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 7.8e-76 287.7 215 60.9
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.7e-75 286.6 225 56.0
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.9e-75 285.8 228 58.3
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.8e-75 285.4 215 59.5
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 5.0e-75 285.0 215 60.9
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 5.0e-75 285.0 225 58.2
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 8.6e-75 284.3 215 60.0
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 8.6e-75 284.3 215 59.1
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 1.1e-74 283.9 223 58.3
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.1e-74 283.9 213 59.2
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.1e-74 283.9 215 61.4
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.5e-74 283.5 215 59.1
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 1.9e-74 283.1 225 59.1
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 1.9e-74 283.1 215 60.0
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.9e-74 283.1 227 59.0
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.9e-74 283.1 215 59.1
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 3.3e-74 282.3 228 57.9
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 3.3e-74 282.3 228 57.9
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 4.3e-74 282.0 215 59.1
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 4.3e-74 282.0 225 57.8
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 4.3e-74 282.0 225 57.8
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 4.3e-74 282.0 225 57.8
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 5.6e-74 281.6 228 57.0
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 5.6e-74 281.6 228 57.0
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 7.3e-74 281.2 221 57.5
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 7.3e-74 281.2 215 60.0
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 7.3e-74 281.2 213 60.1
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 9.5e-74 280.8 225 57.3
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 9.5e-74 280.8 225 57.3
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 9.5e-74 280.8 225 57.3
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 9.5e-74 280.8 213 59.2
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 9.5e-74 280.8 225 57.8
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.2e-73 280.4 227 58.6
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 2.8e-73 279.3 215 59.1
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 3.6e-73 278.9 221 56.6
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 3.6e-73 278.9 228 53.9
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 3.6e-73 278.9 225 57.3
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.6e-73 278.9 215 59.5
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.6e-73 278.9 215 59.5
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.6e-73 278.9 215 59.5
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 4.7e-73 278.5 215 58.1
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 8.0e-73 277.7 215 57.2
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 8.0e-73 277.7 228 57.9
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 8.0e-73 277.7 221 57.9
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.0e-72 277.3 228 53.5
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.4e-72 276.9 225 56.4
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 1.8e-72 276.6 228 57.5
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.3e-72 276.2 222 58.6
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 2.3e-72 276.2 227 55.9
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.3e-72 276.2 213 57.7
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 3.0e-72 275.8 215 59.5
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 3.0e-72 275.8 215 59.5
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 3.0e-72 275.8 213 58.2
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.2e-72 275.0 211 60.2
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 6.8e-72 274.6 215 59.1
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.2e-71 273.9 234 56.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.5e-71 273.5 227 55.9
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 1.5e-71 273.5 213 57.3
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 2.0e-71 273.1 227 55.9
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 2.6e-71 272.7 240 53.3
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.6e-71 272.7 231 56.7
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 3.4e-71 272.3 229 58.5
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 4.4e-71 271.9 228 57.0
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 5.8e-71 271.6 218 57.8
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 5.8e-71 271.6 215 54.4
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 5.8e-71 271.6 269 50.9
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 9.8e-71 270.8 229 55.9
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.7e-70 270.0 215 57.7
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.2e-70 269.6 215 56.3
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.9e-70 269.2 213 57.3
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.7e-70 268.9 218 57.3
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 8.3e-70 267.7 228 52.2
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 2.4e-69 266.2 215 57.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.2e-69 265.8 225 56.0
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 4.1e-69 265.4 215 57.2
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 5.4e-69 265.0 215 56.3
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 5.4e-69 265.0 215 57.7
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 3.5e-68 262.3 234 53.4
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 7.8e-68 261.2 215 55.3
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.7e-67 260.0 215 55.3
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 2.3e-67 259.6 193 61.7
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 3.3e-66 255.8 215 54.9
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 3.3e-66 255.8 294 45.6
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 5.6e-66 255.0 217 53.0
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 2.1e-65 253.1 237 51.5
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 2.1e-65 253.1 204 53.9
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 3.1e-64 249.2 225 52.9
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 4.0e-64 248.8 188 61.7
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 6.8e-64 248.1 201 53.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 2.0e-63 246.5 219 53.9
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 2.6e-63 246.1 197 58.4
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.4e-63 245.4 210 52.4
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 5.8e-63 245.0 189 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.3e-62 243.8 218 51.4
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 8.3e-62 241.1 209 51.2
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 2.4e-61 239.6 201 52.7
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 1.6e-60 236.9 221 49.3
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.6e-60 236.9 220 52.7
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.3e-59 233.0 196 56.6
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 3.0e-59 232.6 199 55.3
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.6e-59 231.1 213 51.6
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 3.6e-57 225.7 166 61.4
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 1.0e-51 207.6 183 50.3
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 1.7e-51 206.8 220 45.9
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 5.1e-51 205.3 183 54.1
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.6e-49 200.3 242 42.1
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.4e-48 197.2 152 61.8
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 6.4e-46 188.3 152 56.6
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.2e-44 184.1 215 47.0
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 2.7e-44 183.0 145 57.9
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 2.4e-40 169.9 164 47.6
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 7.6e-39 164.9 127 58.3
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 1.1e-34 151.0 235 38.3
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.4e-32 144.1 120 52.5
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 2.9e-30 136.3 216 36.1
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 8.1e-25 118.2 97 51.5
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.7e-22 110.5 100 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.8e-19 100.5 92 48.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 3.4e-15 86.3 60 65.0
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 8.7e-11 71.6 58 55.2
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.2e-07 61.2 82 42.7


User provided reference genes

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