Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009870 Simmondsia chinensis HOM05D048694 ORTHO05D000636 2.5e-108 395.6 221 100.0
Sc13g0009880 Simmondsia chinensis HOM05D048694 ORTHO05D388011 5.7e-76 288.1 221 79.6
EL10Ac2g04862 Beta vulgaris HOM05D000815 ORTHO05D000636 2.4e-10 70.1 166 30.1
Peaxi162Scf00871g00029 Petunia axillaris HOM05D000815 ORTHO05D000636 1.2e-09 67.8 179 31.3
Hma1.2p1_0178F.1_g078790 Hydrangea macrophylla HOM05D000815 ORTHO05D000636 1.0e-08 64.7 223 26.9
CDE11G0501 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 1.3e-08 64.3 196 28.6
SHI19433 Sapria himalayana HOM05D000815 ORTHO05D000636 1.3e-08 64.3 242 25.6
Hund21173 Selenicereus undatus HOM05D000815 ORTHO05D000636 1.7e-08 63.9 96 38.5
Ah.01g003560 Amaranthus hybridus HOM05D000815 ORTHO05D000636 2.3e-08 63.5 238 25.2
CAN.G370.79 Capsicum annuum HOM05D000815 ORTHO05D000636 3.0e-08 63.2 190 27.9
Lj2A301T55 Lonicera japonica HOM05D000815 ORTHO05D000636 3.0e-08 63.2 205 27.3
Nitab4.5_0000605g0160 Nicotiana tabacum HOM05D000815 ORTHO05D000636 3.0e-08 63.2 97 39.2
Sc21g0004150 Simmondsia chinensis HOM05D000815 ORTHO05D000636 3.0e-08 63.2 269 26.4
ATR0602G048 Amborella trichopoda HOM05D000815 ORTHO05D000636 3.9e-08 62.8 210 26.7
AUR62031211 Chenopodium quinoa HOM05D000815 ORTHO05D000636 3.9e-08 62.8 189 28.0
HanXRQChr01g0008201 Helianthus annuus HOM05D000815 ORTHO05D000636 5.1e-08 62.4 119 34.5
Nitab4.5_0001923g0040 Nicotiana tabacum HOM05D000815 ORTHO05D000636 6.6e-08 62.0 96 38.5
QL08p041784 Quercus lobata HOM05D000815 ORTHO05D000636 8.6e-08 61.6 229 27.9
Actinidia20349 Actinidia chinensis HOM05D000815 ORTHO05D000636 1.1e-07 61.2 216 26.4
DCAR_007945 Daucus carota HOM05D000815 ORTHO05D000636 1.1e-07 61.2 106 35.8
Mapoly0003s0288 Marchantia polymorpha HOM05D000815 ORTHO05D000636 1.1e-07 61.2 213 26.3
unitig_85.g27293 Utricularia gibba HOM05D000815 ORTHO05D000636 1.1e-07 61.2 122 33.6
Cc05_g08380 Coffea canephora HOM05D000815 ORTHO05D000636 1.5e-07 60.8 113 35.4
Sabra03G0082600 Salix brachista HOM05D000015 ORTHO05D000636 1.5e-07 60.8 96 36.5
Hund07793 Selenicereus undatus HOM05D000815 ORTHO05D000636 1.5e-07 60.8 226 26.5
AT5G05550 Arabidopsis thaliana HOM05D000815 ORTHO05D000636 1.9e-07 60.5 205 27.8
CSS0047777 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 1.9e-07 60.5 216 25.9
Ciclev10016016m.g Citrus clementina HOM05D000815 ORTHO05D000636 1.9e-07 60.5 113 34.5
FAN03G1260 Fragaria x ananassa HOM05D000815 ORTHO05D000636 1.9e-07 60.5 177 27.1
FAN10G0549 Fragaria x ananassa HOM05D000815 ORTHO05D000636 1.9e-07 60.5 175 25.7
SalBow8G0414 Salvia bowleyana HOM05D000815 ORTHO05D000636 1.9e-07 60.5 130 30.0
PGSC0003DMG400010197 Solanum tuberosum HOM05D000815 ORTHO05D000636 1.9e-07 60.5 96 37.5
Cc02_g15010 Coffea canephora HOM05D000815 ORTHO05D000636 2.5e-07 60.1 211 26.1
Gohir.A10G037000 Gossypium hirsutum HOM05D000815 ORTHO05D000636 2.5e-07 60.1 107 35.5
Gohir.D10G037600 Gossypium hirsutum HOM05D000815 ORTHO05D000636 2.5e-07 60.1 107 35.5
Gorai.011G039600 Gossypium raimondii HOM05D000815 ORTHO05D000636 2.5e-07 60.1 107 35.5
TWI59G0443 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 2.5e-07 60.1 122 31.1
unitig_699.g19363 Utricularia gibba HOM05D000815 ORTHO05D000636 2.5e-07 60.1 107 33.6
ClCG07G002760 Citrullus lanatus HOM05D000815 ORTHO05D000636 3.3e-07 59.7 117 36.8
Lalb_Chr15g0086101 Lupinus albus HOM05D000815 ORTHO05D000636 3.3e-07 59.7 111 32.4
Sabra01G0086900 Salix brachista HOM05D000815 ORTHO05D000636 3.3e-07 59.7 111 34.2
GSVIVG01030322001 Vitis vinifera HOM05D000815 ORTHO05D000636 3.3e-07 59.7 192 28.6
Potri.001G113600 Populus trichocarpa HOM05D000815 ORTHO05D000636 4.3e-07 59.3 111 34.2
Sc05g0007080 Simmondsia chinensis HOM05D000815 ORTHO05D000636 4.3e-07 59.3 112 35.7
TWI60G0759 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 4.3e-07 59.3 111 33.3
Aqoxy4G00340 Aquilegia oxysepala HOM05D000815 ORTHO05D000636 5.6e-07 58.9 201 27.9
ClCG01G023750 Citrullus lanatus HOM05D001767 ORTHO05D000636 5.6e-07 58.9 160 30.0
Lsat_1_v5_gn_7_42220 Lactuca sativa HOM05D000815 ORTHO05D000636 5.6e-07 58.9 211 25.1
Lsat_1_v5_gn_8_140740 Lactuca sativa HOM05D000815 ORTHO05D000636 5.6e-07 58.9 117 35.0
Sed0023637 Sechium edule HOM05D000815 ORTHO05D000636 5.6e-07 58.9 105 32.4
TWI38G1375 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 5.6e-07 58.9 111 32.4
Atru.chr10.1663 Acer truncatum HOM05D000815 ORTHO05D000636 7.3e-07 58.5 101 34.7
CSS0044216 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 7.3e-07 58.5 125 31.2
Cpa.g.sc209.41 Carica papaya HOM05D000815 ORTHO05D000636 7.3e-07 58.5 197 26.9
Aa31LG11G6610 Aethionema arabicum HOM05D000815 ORTHO05D000636 9.6e-07 58.2 234 25.6
EL10Ac8g20595 Beta vulgaris HOM05D000815 ORTHO05D000636 9.6e-07 58.2 96 36.5
CAN.G1081.15 Capsicum annuum HOM05D000815 ORTHO05D000636 9.6e-07 58.2 94 38.3
CARHR085680 Cardamine hirsuta HOM05D000815 ORTHO05D000636 9.6e-07 58.2 202 25.7
CARHR169020 Cardamine hirsuta HOM05D000815 ORTHO05D000636 9.6e-07 58.2 129 34.9
MELO3C018722.2 Cucumis melo HOM05D000815 ORTHO05D000636 9.6e-07 58.2 226 27.0
CsaV3_7G005690 Cucumis sativus L. HOM05D000815 ORTHO05D000636 9.6e-07 58.2 226 27.0
Duzib235G0969 Durio zibethinus HOM05D000815 ORTHO05D000636 9.6e-07 58.2 99 35.4
Lj8A101T44 Lonicera japonica HOM05D000815 ORTHO05D000636 9.6e-07 58.2 251 25.9
Nitab4.5_0021218g0010 Nicotiana tabacum HOM05D000815 ORTHO05D000636 9.6e-07 58.2 119 34.5
Oeu058993.2 Olea europaea HOM05D000815 ORTHO05D000636 9.6e-07 58.2 110 34.5
RhsimUnG0085700 Rhododendron simsii HOM05D000815 ORTHO05D000636 9.6e-07 58.2 207 28.0
Thecc.06G170300 Theobroma cacao HOM05D000815 ORTHO05D000636 9.6e-07 58.2 106 34.9
TWI63G0072 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 9.6e-07 58.2 111 31.5
Actinidia16795 Actinidia chinensis HOM05D000815 ORTHO05D000636 1.2e-06 57.8 114 31.6
AL6G15440 Arabidopsis lyrata HOM05D000815 ORTHO05D000636 1.2e-06 57.8 199 26.6
MSTRG.13222 Avicennia marina HOM05D000815 ORTHO05D000636 1.2e-06 57.8 96 35.4
MSTRG.15090 Avicennia marina HOM05D000815 ORTHO05D000636 1.2e-06 57.8 121 32.2
Dinv41588 Davidia involucrata HOM05D000815 ORTHO05D000636 1.2e-06 57.8 214 28.0
Gohir.A09G083000 Gossypium hirsutum HOM05D000815 ORTHO05D000636 1.2e-06 57.8 214 26.6
Gorai.006G098600 Gossypium raimondii HOM05D000815 ORTHO05D000636 1.2e-06 57.8 214 26.2
Medtr4g079960 Medicago truncatula HOM05D000815 ORTHO05D000636 1.2e-06 57.8 123 33.3
Oeu039919.2 Olea europaea HOM05D000815 ORTHO05D000636 1.2e-06 57.8 96 36.5
Phvul.006G176000 Phaseolus vulgaris HOM05D000815 ORTHO05D000636 1.2e-06 57.8 123 30.9
Potri.003G118600 Populus trichocarpa HOM05D000815 ORTHO05D000636 1.2e-06 57.8 108 34.3
QL05p047279 Quercus lobata HOM05D000815 ORTHO05D000636 1.2e-06 57.8 106 34.9
Sed0020128 Sechium edule HOM05D000815 ORTHO05D000636 1.2e-06 57.8 216 24.5
VMungo0540G0075 Vigna mungo HOM05D000815 ORTHO05D000636 1.2e-06 57.8 123 30.9
Aqoxy1G02059 Aquilegia oxysepala HOM05D000815 ORTHO05D000636 1.6e-06 57.4 103 34.0
Cpa.g.sc7.72 Carica papaya HOM05D000815 ORTHO05D000636 1.6e-06 57.4 119 31.9
Cfa000610 Carpinus fangiana HOM05D000815 ORTHO05D000636 1.6e-06 57.4 103 34.0
Haze_06228 Corylus avellana HOM05D000815 ORTHO05D000636 1.6e-06 57.4 103 34.0
Duzib192G0497 Durio zibethinus HOM05D000815 ORTHO05D000636 1.6e-06 57.4 107 33.6
Lalb_Chr18g0054541 Lupinus albus HOM05D000815 ORTHO05D000636 1.6e-06 57.4 127 30.7
Potri.003G056000 Populus trichocarpa HOM05D000815 ORTHO05D000636 1.6e-06 57.4 224 26.8
Sopen02g021710 Solanum pennellii HOM05D000815 ORTHO05D000636 1.6e-06 57.4 96 36.5
arahy.Tifrunner.gnm1.ann1.AVX1YG Arachis hypogaea HOM05D000815 ORTHO05D000636 2.1e-06 57.0 112 32.1
arahy.Tifrunner.gnm1.ann1.S1Y3JB Arachis hypogaea HOM05D000815 ORTHO05D000636 2.1e-06 57.0 112 32.1
MSTRG.16152 Avicennia marina HOM05D000815 ORTHO05D000636 2.1e-06 57.0 97 34.0
BraA01t04200Z Brassica rapa HOM05D000815 ORTHO05D000636 2.1e-06 57.0 217 27.2
CSS0046208 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 2.1e-06 57.0 199 28.1
Carub.0005s2540 Capsella rubella HOM05D000815 ORTHO05D000636 2.1e-06 57.0 120 34.2
AUR62027681 Chenopodium quinoa HOM05D000815 ORTHO05D000636 2.1e-06 57.0 166 28.3
AUR62041746 Chenopodium quinoa HOM05D000815 ORTHO05D000636 2.1e-06 57.0 104 35.6
CsaV3_UNG085670 Cucumis sativus L. HOM05D000815 ORTHO05D000636 2.1e-06 57.0 105 31.4
CsaV3_UNG085680 Cucumis sativus L. HOM05D000815 ORTHO05D000636 2.1e-06 57.0 105 31.4
Migut.H01434 Erythranthe guttata HOM05D000815 ORTHO05D000636 2.1e-06 57.0 141 33.3
PGR031G0746 Punica granatum HOM05D000815 ORTHO05D000636 2.1e-06 57.0 114 31.6
Sed0010769 Sechium edule HOM05D000815 ORTHO05D000636 2.1e-06 57.0 217 26.7
Solyc02g076810.4 Solanum lycopersicum HOM05D000815 ORTHO05D000636 2.1e-06 57.0 96 36.5
HPP92_013026 Vanilla planifolia HOM05D000815 ORTHO05D000636 2.1e-06 57.0 135 31.9
MSTRG.14734 Avicennia marina HOM05D000815 ORTHO05D000636 2.8e-06 56.6 112 36.6
EL10Ac9g20942 Beta vulgaris HOM05D000815 ORTHO05D000636 2.8e-06 56.6 242 25.6
AUR62022916 Chenopodium quinoa HOM05D000815 ORTHO05D000636 2.8e-06 56.6 175 26.3
MELO3C002654.2 Cucumis melo HOM05D000815 ORTHO05D000636 2.8e-06 56.6 105 31.4
Lalb_Chr14g0371431 Lupinus albus HOM05D000815 ORTHO05D000636 2.8e-06 56.6 208 27.4
Lalb_Chr20g0117461 Lupinus albus HOM05D000815 ORTHO05D000636 2.8e-06 56.6 112 32.1
Oeu041768.1 Olea europaea HOM05D000815 ORTHO05D000636 2.8e-06 56.6 96 36.5
PSO675G0634 Papaver somniferum HOM05D000815 ORTHO05D000636 2.8e-06 56.6 103 34.0
TWI34G0253 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 2.8e-06 56.6 208 27.4
ATR0681G259 Amborella trichopoda HOM05D000815 ORTHO05D000636 3.6e-06 56.2 227 28.6
CDE10G0137 Ceratophyllum demersum HOM05D000815 ORTHO05D000636 3.6e-06 56.2 105 31.4
Ca_01451_v3 Cicer arietinum L. HOM05D000815 ORTHO05D000636 3.6e-06 56.2 95 32.6
Ca_29623_v3 Cicer arietinum L. HOM05D000815 ORTHO05D000636 3.6e-06 56.2 95 32.6
DCAR_004005 Daucus carota HOM05D000815 ORTHO05D000636 3.6e-06 56.2 136 29.4
Dinv40679 Davidia involucrata HOM05D000815 ORTHO05D000636 3.6e-06 56.2 119 34.5
HanXRQChr02g0036281 Helianthus annuus HOM05D000815 ORTHO05D000636 3.6e-06 56.2 117 35.0
Lsat_1_v5_gn_5_157100 Lactuca sativa HOM05D000815 ORTHO05D000636 3.6e-06 56.2 119 31.1
Lalb_Chr01g0006021 Lupinus albus HOM05D000815 ORTHO05D000636 3.6e-06 56.2 144 32.6
MD10G1279600 Malus domestica HOM05D000815 ORTHO05D000636 3.6e-06 56.2 114 33.3
Manes.16G040100 Manihot esculenta HOM05D000815 ORTHO05D000636 3.6e-06 56.2 111 32.4
Rhsim06G0131000 Rhododendron simsii HOM05D000815 ORTHO05D000636 3.6e-06 56.2 107 33.6
SGA_v2.0_scaffold16G07683 Striga asiatica HOM05D000815 ORTHO05D000636 3.6e-06 56.2 123 30.9
MSTRG.7410 Avicennia marina HOM05D000815 ORTHO05D000636 4.7e-06 55.8 96 35.4
BolC3t21514H Brassica oleracea HOM05D000815 ORTHO05D000636 4.7e-06 55.8 183 25.1
CSS0043386 Camellia sinensis var. sinensis HOM05D000815 ORTHO05D000636 4.7e-06 55.8 217 24.4
Cfa023594 Carpinus fangiana HOM05D000815 ORTHO05D000636 4.7e-06 55.8 215 27.9
Lj3g0003562 Lotus japonicus HOM05D000815 ORTHO05D000636 4.7e-06 55.8 110 32.7
MD05G1300700 Malus domestica HOM05D000815 ORTHO05D000636 4.7e-06 55.8 112 33.0
Manes.17G056000 Manihot esculenta HOM05D000815 ORTHO05D000636 4.7e-06 55.8 120 32.5
Nitab4.5_0009892g0030 Nicotiana tabacum HOM05D000815 ORTHO05D000636 4.7e-06 55.8 94 37.2
Sed0022312 Sechium edule HOM05D000815 ORTHO05D000636 4.7e-06 55.8 119 33.6
BcaC01g01430 Brassica carinata HOM05D000815 ORTHO05D000636 6.2e-06 55.5 182 24.2
C03p91940 Brassica napus HOM05D000815 ORTHO05D000636 6.2e-06 55.5 182 24.2
ClCG03G007670 Citrullus lanatus HOM05D000815 ORTHO05D000636 6.2e-06 55.5 105 30.5
Migut.M01037 Erythranthe guttata HOM05D000815 ORTHO05D000636 6.2e-06 55.5 111 35.1
Rhsim02G0143100 Rhododendron simsii HOM05D000815 ORTHO05D000636 6.2e-06 55.5 166 28.3
Sed0017319 Sechium edule HOM05D000815 ORTHO05D000636 6.2e-06 55.5 206 26.7
SGA_v2.0_scaffold12G06108 Striga asiatica HOM05D000815 ORTHO05D000636 6.2e-06 55.5 98 34.7
SGA_v2.0_scaffold9G04822 Striga asiatica HOM05D000815 ORTHO05D000636 6.2e-06 55.5 116 30.2
TWI14G1306 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 6.2e-06 55.5 168 27.4
TAR626G0625 Trochodendron aralioides HOM05D000815 ORTHO05D000636 6.2e-06 55.5 94 37.2
CiPaw.10G059200 Carya illinoinensis HOM05D000815 ORTHO05D000636 8.1e-06 55.1 96 33.3
Duzib106G1636 Durio zibethinus HOM05D000815 ORTHO05D000636 8.1e-06 55.1 214 28.0
FvH4_6g35290 Fragaria vesca HOM05D000815 ORTHO05D000636 8.1e-06 55.1 113 34.5
FAN09G3238 Fragaria x ananassa HOM05D000815 ORTHO05D000636 8.1e-06 55.1 113 34.5
FAN14G0432 Fragaria x ananassa HOM05D000815 ORTHO05D000636 8.1e-06 55.1 113 34.5
Hma1.2p1_0018F.1_g013350 Hydrangea macrophylla HOM05D000815 ORTHO05D000636 8.1e-06 55.1 219 26.5
MBI06_g08591_MAGBIO Magnolia biondii HOM05D000815 ORTHO05D000636 8.1e-06 55.1 99 35.4
Sp3g08340 Schrenkiella parvula HOM05D002004 ORTHO05D002089 8.1e-06 55.1 120 30.0
TWI63G0034 Tripterygium wilfordii HOM05D000815 ORTHO05D000636 8.1e-06 55.1 207 27.1


User provided reference genes

Program Settings