Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.0e-228 795.4 395 100.0
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.7e-152 541.2 338 77.8
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 5.6e-151 538.1 353 75.6
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 2.8e-150 535.8 355 75.5
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 3.1e-149 532.3 335 76.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.7e-147 526.6 346 73.1
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 6.4e-147 524.6 335 77.0
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 2.1e-142 509.6 347 71.5
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 6.2e-142 508.1 340 72.1
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 6.9e-141 504.6 336 73.2
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 1.2e-140 503.8 346 71.7
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 7.6e-140 501.1 340 72.4
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.0e-139 500.7 345 70.7
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 1.0e-139 500.7 338 72.2
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.2e-138 495.7 345 69.3
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 4.2e-138 495.4 340 70.9
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 4.2e-138 495.4 365 67.4
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.5e-138 495.0 356 68.3
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 5.5e-138 495.0 340 70.9
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 5.5e-138 495.0 342 70.8
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 5.5e-138 495.0 340 70.3
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 9.3e-138 494.2 345 70.1
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.6e-137 493.4 342 70.2
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 1.6e-137 493.4 352 71.3
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 2.1e-137 493.0 340 70.0
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.7e-137 492.7 343 70.0
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.7e-137 492.7 352 68.2
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 3.5e-137 492.3 323 74.0
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 4.6e-137 491.9 340 70.0
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 4.6e-137 491.9 340 69.7
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 4.6e-137 491.9 352 68.2
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.6e-137 491.9 352 68.2
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 6.0e-137 491.5 340 68.8
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 6.0e-137 491.5 341 71.3
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 7.9e-137 491.1 340 70.3
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 7.9e-137 491.1 342 71.1
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.3e-136 490.3 340 70.9
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.8e-136 490.0 373 65.4
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.3e-136 489.6 344 70.6
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 2.3e-136 489.6 340 70.0
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 3.0e-136 489.2 342 70.5
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 3.9e-136 488.8 342 70.5
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 5.1e-136 488.4 342 69.6
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 6.7e-136 488.0 365 66.6
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.1e-135 487.3 336 69.9
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.5e-135 486.9 345 69.3
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.5e-135 486.9 373 65.1
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.9e-135 486.5 344 68.3
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 1.9e-135 486.5 373 65.4
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 1.9e-135 486.5 343 69.1
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.9e-135 486.5 351 68.9
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 2.5e-135 486.1 345 68.4
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 3.3e-135 485.7 345 67.5
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 3.3e-135 485.7 341 68.9
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 3.3e-135 485.7 342 69.6
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 3.3e-135 485.7 343 69.7
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 4.3e-135 485.3 366 65.8
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 5.7e-135 485.0 335 69.9
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.7e-135 484.2 354 67.2
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.3e-134 483.8 344 68.6
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 2.2e-134 483.0 340 68.8
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 2.8e-134 482.6 351 68.9
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 2.8e-134 482.6 323 71.8
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 4.8e-134 481.9 345 66.4
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 4.8e-134 481.9 345 66.4
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 4.8e-134 481.9 342 68.1
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 4.8e-134 481.9 349 66.8
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.8e-134 481.9 341 70.1
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 6.3e-134 481.5 323 69.3
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.1e-133 480.7 339 67.8
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 1.1e-133 480.7 345 67.0
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 3.1e-133 479.2 345 66.1
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 3.1e-133 479.2 340 68.2
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 3.1e-133 479.2 335 69.3
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 4.1e-133 478.8 351 66.1
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 5.3e-133 478.4 340 67.4
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.3e-133 478.4 339 68.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 9.0e-133 477.6 365 66.8
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.2e-132 477.2 366 64.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.0e-132 476.5 344 66.6
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.5e-132 475.3 343 67.6
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 5.9e-132 474.9 345 67.2
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 7.6e-132 474.6 352 66.5
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 7.6e-132 474.6 344 66.6
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 1.0e-131 474.2 344 66.9
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 1.3e-131 473.8 340 67.9
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 1.7e-131 473.4 344 65.7
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 5.0e-131 471.9 344 66.9
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 5.0e-131 471.9 344 66.9
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 5.0e-131 471.9 341 67.7
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 6.5e-131 471.5 370 62.7
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 6.5e-131 471.5 397 61.5
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 8.5e-131 471.1 366 64.2
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 8.5e-131 471.1 322 69.9
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 1.1e-130 470.7 340 67.4
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.9e-130 469.9 369 64.8
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 2.5e-130 469.5 358 64.5
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 3.2e-130 469.2 343 63.6
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 7.2e-130 468.0 353 65.7
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.2e-129 467.2 325 68.6
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 1.6e-129 466.8 344 66.0
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 4.6e-129 465.3 350 64.9
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 6.1e-129 464.9 347 64.8
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 6.1e-129 464.9 347 64.8
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.0e-128 462.6 339 67.6
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 3.0e-128 462.6 342 66.7
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 3.9e-128 462.2 344 63.7
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 6.7e-128 461.5 389 59.6
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.1e-127 460.7 437 57.7
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.9e-127 459.9 321 67.6
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.9e-127 459.9 322 67.4
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 3.3e-127 459.1 369 61.8
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 4.3e-127 458.8 335 63.9
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 7.4e-127 458.0 334 66.2
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 9.7e-127 457.6 397 59.7
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 3.7e-126 455.7 372 61.6
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 4.8e-126 455.3 463 53.3
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.8e-125 453.4 369 62.3
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.4e-120 437.2 298 70.1
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 3.0e-120 436.0 341 63.0
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 8.8e-120 434.5 339 61.9
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.3e-118 430.6 335 63.3
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 4.8e-118 428.7 338 61.2
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.8e-117 426.8 358 58.4
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 5.9e-116 421.8 387 55.6
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 4.1e-101 372.5 388 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 2.9e-99 366.3 361 49.3
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 2.1e-97 360.1 226 73.9
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 6.3e-94 348.6 318 51.3
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.5e-90 337.4 363 47.7
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.2e-87 327.8 379 45.6
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 9.5e-82 308.1 196 73.5
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 2.0e-79 300.4 309 51.8
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.9e-74 283.9 271 53.5
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 3.4e-71 273.1 272 48.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.0e-67 261.5 344 44.5
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 3.0e-67 260.0 245 55.5
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 3.0e-67 260.0 173 71.1
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.4e-47 193.0 304 40.1
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 3.8e-46 189.9 148 60.1
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.8e-41 173.7 123 62.6
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 2.8e-41 173.7 137 64.2
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.2e-36 158.3 322 31.4
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 2.0e-31 141.0 338 30.5
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 2.8e-25 120.6 110 59.1
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.7e-25 120.2 77 71.4
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 6.9e-24 115.9 111 60.4
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 1.7e-22 111.3 61 80.3
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 8.4e-22 109.0 90 62.2
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.6e-20 104.8 59 74.6
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.1e-18 98.6 127 44.9
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 3.3e-18 97.1 61 70.5
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.6e-17 94.7 69 59.4
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 4.2e-13 80.1 68 52.9
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 1.2e-12 78.6 68 57.4
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 1.5e-10 71.6 55 60.0
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 2.0e-10 71.2 129 38.0
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 4.1e-08 63.5 122 35.2
PSO170G5804 Papaver somniferum HOM05D000363 ORTHO05D000236 5.9e-07 59.7 332 24.4
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 7.7e-07 59.3 334 21.0
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 2.2e-06 57.8 71 39.4
PSO170G6498 Papaver somniferum HOM05D000363 ORTHO05D000236 2.2e-06 57.8 143 28.7
PSO170G0672 Papaver somniferum HOM05D000363 ORTHO05D000236 2.9e-06 57.4 143 29.4
Zm00001eb032970 Zea mays HOM05D000363 ORTHO05D000236 2.9e-06 57.4 69 42.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 3.8e-06 57.0 144 27.8
PSO170G2361 Papaver somniferum HOM05D000363 ORTHO05D000236 3.8e-06 57.0 143 29.4
PSO407G0113 Papaver somniferum HOM05D000363 ORTHO05D000236 3.8e-06 57.0 143 28.7
PSO444G0001 Papaver somniferum HOM05D000363 ORTHO05D000236 3.8e-06 57.0 143 28.7
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 6.5e-06 56.2 155 27.7
Aqoxy2G02903 Aquilegia oxysepala HOM05D000363 ORTHO05D000236 6.5e-06 56.2 143 29.4
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 8.5e-06 55.8 155 27.7
PSO407G0103 Papaver somniferum HOM05D000363 ORTHO05D000236 8.5e-06 55.8 143 29.4


User provided reference genes

Program Settings