Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 7.0e-44 180.3 93 100.0
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.9e-34 147.9 88 85.2
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.3e-33 144.8 90 81.1
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.6e-33 144.1 89 80.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.6e-32 142.5 90 78.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.1e-32 142.1 90 82.2
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 3.6e-32 141.4 90 78.9
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 6.2e-32 140.6 90 76.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.2e-32 140.6 91 75.8
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.1e-32 140.2 90 76.7
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.1e-31 139.8 85 83.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.4e-31 139.4 86 79.1
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.8e-31 139.0 84 81.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 3.1e-31 138.3 84 81.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.0e-31 137.9 84 81.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.0e-31 137.9 83 81.9
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.2e-31 137.5 84 82.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 5.2e-31 137.5 86 79.1
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.2e-31 137.5 82 85.4
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 6.8e-31 137.1 84 82.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.8e-31 137.1 84 82.1
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.8e-31 137.1 84 82.1
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.2e-30 136.3 84 79.8
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.5e-30 136.0 82 80.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.5e-30 136.0 83 81.9
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.0e-30 135.6 89 75.3
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.0e-30 135.6 83 78.3
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.6e-30 135.2 84 77.4
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.4e-30 134.8 87 75.9
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.4e-30 134.4 83 78.3
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 5.8e-30 134.0 90 73.3
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.5e-30 133.7 84 79.8
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 7.5e-30 133.7 90 76.7
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 9.8e-30 133.3 91 75.8
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.3e-29 132.9 84 79.8
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.7e-29 132.5 82 80.5
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.7e-29 132.5 82 80.5
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.7e-29 132.5 84 77.4
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.7e-29 132.5 84 78.6
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 2.2e-29 132.1 81 80.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.2e-29 132.1 86 75.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.2e-29 132.1 86 74.4
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.7e-29 131.3 82 80.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 3.7e-29 131.3 91 75.8
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 3.7e-29 131.3 85 76.5
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 3.7e-29 131.3 90 75.6
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 3.7e-29 131.3 90 75.6
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 4.9e-29 131.0 83 79.5
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.9e-29 131.0 91 74.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.4e-29 130.6 84 79.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.4e-29 130.6 84 79.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.4e-28 129.4 84 76.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.9e-28 129.0 82 79.3
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.9e-28 129.0 82 79.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.4e-28 128.6 77 85.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.4e-28 128.6 83 74.7
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.4e-28 128.6 83 78.3
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.4e-28 128.6 83 78.3
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-28 128.6 83 78.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 5.4e-28 127.5 85 72.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 5.4e-28 127.5 84 73.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.4e-28 127.5 77 83.1
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 7.1e-28 127.1 85 74.1
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 9.2e-28 126.7 84 71.4
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.2e-27 126.3 77 84.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.2e-27 126.3 77 84.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.2e-27 126.3 77 84.4
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-27 125.9 83 78.3
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.6e-27 125.9 84 72.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.6e-27 125.9 83 78.3
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 2.1e-27 125.6 81 80.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.1e-27 125.6 77 83.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.1e-27 125.6 90 68.9
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.7e-27 125.2 87 70.1
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.5e-27 124.8 88 72.7
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 4.6e-27 124.4 81 75.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.6e-27 124.4 83 74.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.6e-27 124.4 88 72.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.0e-27 124.0 81 75.3
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.0e-27 124.0 81 75.3
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 6.0e-27 124.0 81 75.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 7.8e-27 123.6 77 80.5
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 75.3
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.3e-26 122.9 84 73.8
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.3e-26 122.9 83 69.9
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 74.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 74.1
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 74.1
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 74.1
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 3.0e-26 121.7 81 72.8
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.0e-26 121.7 81 74.1
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.1e-26 120.9 75 82.7
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 5.1e-26 120.9 81 72.8
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.6e-26 120.6 81 71.6
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 6.6e-26 120.6 77 81.8
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.6e-26 120.6 76 81.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 8.6e-26 120.2 84 70.2
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 8.6e-26 120.2 77 77.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.5e-25 119.4 81 72.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.9e-25 119.0 81 70.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.9e-25 119.0 81 70.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.9e-25 119.0 81 70.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.9e-25 119.0 81 70.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-25 119.0 91 68.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 2.5e-25 118.6 81 71.6
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.3e-25 117.9 77 79.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.3e-25 117.9 79 70.9
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 5.6e-25 117.5 85 72.9
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 7.3e-25 117.1 81 71.6
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 7.3e-25 117.1 88 69.3
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.5e-25 116.7 73 83.6
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 9.5e-25 116.7 76 77.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.2e-24 116.3 81 69.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.2e-24 116.3 81 69.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.2e-24 116.3 81 69.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.6e-24 115.9 77 74.0
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 3.6e-24 114.8 84 67.9
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 3.6e-24 114.8 84 67.9
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 3.6e-24 114.8 84 67.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.6e-24 114.8 84 70.2
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 4.7e-24 114.4 87 69.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.7e-24 114.4 72 81.9
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.1e-24 113.6 77 80.5
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 8.1e-24 113.6 81 66.7
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.4e-23 112.8 84 69.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.8e-23 112.5 76 78.9
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.2e-22 109.8 76 73.7
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.5e-22 109.4 76 75.0
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.1e-20 103.2 76 73.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.2e-19 99.8 77 68.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.7e-19 98.6 73 69.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 5.1e-18 94.4 60 78.3
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.5e-17 92.8 78 59.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.2e-16 89.7 77 61.0
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.2e-16 89.7 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.4e-15 85.5 75 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.6e-14 82.0 74 59.5
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-13 79.7 81 55.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-13 79.0 56 66.1
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.8e-13 78.2 57 63.2
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.8e-13 78.2 51 74.5
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.8e-13 78.2 51 74.5
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.4e-12 75.5 54 66.7
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 3.0e-10 68.6 80 45.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 6.9e-07 57.4 40 70.0


User provided reference genes

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