Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 1.5e-221 772.7 441 100.0
Hund04730 Selenicereus undatus HOM05D025484 ORTHO05D003332 2.7e-29 134.0 458 31.2
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 6.5e-23 112.8 442 28.3
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 6.3e-18 96.3 110 50.0
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 1.5e-14 85.1 82 50.0
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.0e-13 79.3 59 61.0
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.7e-10 71.6 131 39.7
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 1.7e-10 71.6 63 58.7
AUR62021206 Chenopodium quinoa HOM05D025484 ORTHO05D017259 6.3e-10 69.7 169 32.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 2.4e-09 67.8 68 51.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.1e-09 67.4 119 35.3
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 7.0e-09 66.2 91 39.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 9.2e-09 65.9 62 56.5
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 9.2e-09 65.9 61 49.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 9.2e-09 65.9 87 47.1
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.6e-08 65.1 190 30.5
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.6e-08 65.1 116 32.8
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.0e-08 64.7 119 34.5
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.0e-08 64.7 81 46.9
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.7e-08 64.3 84 41.7
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.7e-08 64.3 86 43.0
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.7e-08 64.3 120 31.7
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 3.5e-08 63.9 86 41.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 3.5e-08 63.9 115 31.3
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.5e-08 63.5 59 47.5
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 4.5e-08 63.5 101 33.7
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.5e-08 63.5 76 47.4
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.7e-08 62.8 96 41.7
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 7.7e-08 62.8 162 31.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 1.0e-07 62.4 58 55.2
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 1.0e-07 62.4 80 42.5
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 1.3e-07 62.0 191 27.2
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.3e-07 62.0 83 41.0
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.3e-07 62.0 60 51.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.7e-07 61.6 84 40.5
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 1.7e-07 61.6 62 51.6
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.3e-07 61.2 56 50.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.3e-07 61.2 127 35.4
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.3e-07 61.2 83 41.0
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.3e-07 61.2 83 41.0
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.3e-07 61.2 127 35.4
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 2.3e-07 61.2 65 44.6
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.9e-07 60.8 85 37.6
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.9e-07 60.8 65 44.6
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 2.9e-07 60.8 71 45.1
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 2.9e-07 60.8 92 40.2
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 2.9e-07 60.8 91 38.5
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.9e-07 60.8 467 24.0
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.8e-07 60.5 75 42.7
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 3.8e-07 60.5 59 52.5
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.8e-07 60.5 87 39.1
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 3.8e-07 60.5 62 51.6
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.8e-07 60.5 68 39.7
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 3.8e-07 60.5 92 41.3
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 3.8e-07 60.5 57 47.4
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.0e-07 60.1 61 49.2
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 5.0e-07 60.1 141 31.9
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.6e-07 59.7 72 43.1
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.6e-07 59.3 62 50.0
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.6e-07 59.3 119 34.5
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 8.6e-07 59.3 67 40.3
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 8.6e-07 59.3 80 43.8
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 8.6e-07 59.3 46 50.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 8.6e-07 59.3 74 39.2
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.6e-07 59.3 176 27.8
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 8.6e-07 59.3 66 42.4
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 1.1e-06 58.9 199 28.6
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 1.1e-06 58.9 162 27.8
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.5e-06 58.5 181 27.1
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.5e-06 58.5 121 30.6
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.5e-06 58.5 75 42.7
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 1.5e-06 58.5 41 58.5
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 1.5e-06 58.5 45 53.3
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.5e-06 58.5 67 46.3
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.9e-06 58.2 57 54.4
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.9e-06 58.2 64 46.9
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 1.9e-06 58.2 67 41.8
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.9e-06 58.2 60 46.7
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.9e-06 58.2 58 48.3
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.9e-06 58.2 85 42.4
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 2.5e-06 57.8 107 33.6
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 2.5e-06 57.8 98 36.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.5e-06 57.8 73 45.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.5e-06 57.8 70 41.4
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.5e-06 57.8 62 50.0
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 2.5e-06 57.8 62 50.0
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.3e-06 57.4 59 49.2
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.3e-06 57.4 107 33.6
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 3.3e-06 57.4 191 28.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.3e-06 57.4 116 32.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.3e-06 57.0 68 44.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 4.3e-06 57.0 65 41.5
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 4.3e-06 57.0 91 34.1
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 4.3e-06 57.0 73 43.8
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 4.3e-06 57.0 89 38.2
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 4.3e-06 57.0 58 51.7
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 4.3e-06 57.0 59 47.5
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 4.3e-06 57.0 71 43.7
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.3e-06 57.0 41 56.1
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 5.6e-06 56.6 77 44.2
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 5.6e-06 56.6 66 43.9
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.3e-06 56.2 72 43.1
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 7.3e-06 56.2 63 42.9
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 7.3e-06 56.2 69 46.4
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 7.3e-06 56.2 101 35.6
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.3e-06 56.2 57 45.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.5e-06 55.8 108 35.2
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 9.5e-06 55.8 108 35.2
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 9.5e-06 55.8 59 45.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 9.5e-06 55.8 65 46.2
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 9.5e-06 55.8 76 44.7
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 9.5e-06 55.8 73 42.5
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.5e-06 55.8 99 37.4


User provided reference genes

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