Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 6.1e-70 267.3 129 100.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.1e-60 236.5 123 91.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-60 236.5 123 91.1
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-60 236.5 123 91.1
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-60 236.5 123 91.1
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-60 236.5 123 91.1
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-60 234.2 123 89.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.7e-60 234.2 123 87.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.4e-60 233.8 123 88.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.3e-59 233.0 123 87.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.7e-59 232.6 123 88.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.2e-59 232.3 123 88.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.2e-59 232.3 125 86.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.2e-59 232.3 123 90.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-59 232.3 123 87.8
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.7e-59 231.5 123 87.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 4.8e-59 231.1 125 85.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 6.3e-59 230.7 123 86.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 6.3e-59 230.7 123 87.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 8.2e-59 230.3 123 87.8
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.4e-58 229.6 123 86.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.4e-58 229.6 123 86.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.4e-58 229.6 123 86.2
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-58 229.6 125 85.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.4e-58 229.6 123 85.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.8e-58 229.2 125 85.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-58 229.2 125 85.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.8e-58 229.2 123 86.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.8e-58 229.2 123 86.2
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.4e-58 228.8 123 84.6
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.4e-58 228.8 123 86.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.4e-58 228.8 123 85.4
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.1e-58 228.4 123 87.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.1e-58 228.0 123 87.8
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.1e-58 228.0 123 86.2
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.1e-58 228.0 123 86.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.3e-58 227.6 125 84.8
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.3e-58 227.6 123 86.2
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 6.9e-58 227.3 123 87.8
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 6.9e-58 227.3 123 85.4
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.1e-58 226.9 123 87.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 9.1e-58 226.9 123 86.2
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.5e-57 226.1 123 85.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.5e-57 226.1 123 83.7
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.5e-57 226.1 123 83.7
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.0e-57 225.7 123 84.6
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.6e-57 225.3 123 84.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.6e-57 225.3 123 84.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.6e-57 225.3 123 84.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 4.5e-57 224.6 123 85.4
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.9e-57 224.2 140 79.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.9e-57 224.2 123 84.6
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.7e-57 223.8 140 79.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.7e-57 223.8 140 79.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.7e-56 222.6 123 84.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.7e-56 222.6 123 83.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.2e-56 222.2 123 84.6
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.2e-56 222.2 123 85.4
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.2e-56 222.2 123 83.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.9e-56 221.9 123 82.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.9e-56 221.9 123 83.7
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.8e-56 221.5 123 84.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.8e-56 221.5 123 82.1
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 8.5e-56 220.3 123 83.7
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.1e-55 219.9 125 80.8
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.9e-55 219.2 123 82.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.9e-55 219.2 123 82.1
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.2e-55 218.0 123 82.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.2e-55 218.0 123 81.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.5e-55 217.6 123 81.3
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.2e-55 217.2 123 82.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 7.2e-55 217.2 123 82.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.2e-54 216.5 123 80.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.2e-54 216.5 123 82.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.1e-54 215.7 123 79.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.6e-54 214.9 123 81.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.7e-54 214.5 123 84.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 7.9e-54 213.8 136 75.0
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.9e-54 213.8 123 82.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 7.9e-54 213.8 124 83.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 7.9e-54 213.8 123 81.3
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.0e-53 213.4 123 80.5
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.0e-53 211.8 123 78.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.0e-53 211.8 140 73.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.2e-53 211.1 123 76.4
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.2e-53 211.1 123 79.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.8e-53 210.3 123 78.0
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.8e-53 210.3 123 78.0
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 8.8e-53 210.3 123 78.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.1e-52 209.9 123 78.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.5e-52 209.5 123 77.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-52 209.1 123 77.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.4e-52 208.0 123 78.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.4e-52 207.2 146 71.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 9.7e-52 206.8 123 76.4
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.2e-51 205.7 123 76.4
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-51 205.7 171 62.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.7e-51 204.9 123 75.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.2e-51 203.8 123 75.6
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.2e-51 203.8 123 75.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-50 203.0 151 66.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.4e-50 203.0 123 77.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.8e-50 202.6 123 73.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.3e-50 201.1 123 74.8
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 7.0e-50 200.7 179 58.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 9.1e-50 200.3 125 74.4
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.6e-49 199.5 113 83.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.6e-49 199.5 113 83.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 7.7e-49 197.2 123 76.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.0e-48 196.8 123 74.8
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.0e-48 196.8 123 74.8
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.0e-48 196.8 125 75.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.2e-48 195.7 123 73.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.2e-48 195.7 125 76.0
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 5.0e-48 194.5 110 82.7
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 8.5e-48 193.7 123 74.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.5e-48 193.7 134 75.4
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.7e-46 188.0 123 70.7
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 6.1e-46 187.6 112 76.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.4e-45 186.4 125 72.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.0e-45 185.3 108 80.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.8e-43 178.7 130 70.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 5.9e-41 171.0 116 73.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.0e-40 170.2 155 57.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-40 170.2 114 76.3
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.9e-40 168.7 109 72.5
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.1e-39 166.8 123 67.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.2e-39 164.9 113 71.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 9.4e-39 163.7 89 83.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.4e-37 159.8 124 66.9
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.0e-37 158.3 125 63.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.6e-36 155.6 79 92.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.4e-36 155.2 123 65.9
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.4e-36 154.8 85 88.2
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.4e-36 154.8 89 84.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-36 154.8 90 84.4
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 9.8e-36 153.7 90 83.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-35 153.3 79 92.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-35 152.9 79 92.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-35 152.9 79 91.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-35 152.5 79 91.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.8e-35 151.4 88 78.4
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.2e-33 146.7 79 88.6
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.5e-33 145.2 91 74.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.5e-33 144.8 79 89.9
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.4e-26 122.5 83 68.7
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.7e-22 108.2 58 89.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.8e-21 104.4 77 67.5
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.8e-20 100.5 52 94.2
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.9e-19 99.0 75 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-17 93.6 56 76.8
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-17 93.2 58 72.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.0e-16 90.5 48 91.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.9e-16 88.6 56 76.8
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.6e-16 87.4 57 68.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 85.9 78 59.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.1e-13 80.5 119 41.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.2e-13 78.2 49 73.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-11 72.8 46 67.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.6e-09 65.1 94 38.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.0e-08 61.6 41 70.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.0e-08 61.6 37 73.0


User provided reference genes

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