Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001160 Simmondsia chinensis HOM05D001433 ORTHO05D388312 1.2e-67 259.6 119 100.0
Actinidia09260 Actinidia chinensis HOM05D001433 ORTHO05D005172 1.1e-14 83.6 44 88.6
Actinidia17946 Actinidia chinensis HOM05D001433 ORTHO05D005172 1.1e-14 83.6 44 88.6
EL10Ac3g07231 Beta vulgaris HOM05D001433 ORTHO05D005172 1.1e-14 83.6 44 88.6
QL07p010117 Quercus lobata HOM05D001433 ORTHO05D005172 1.1e-14 83.6 44 88.6
Rhsim03G0040000 Rhododendron simsii HOM05D001433 ORTHO05D005172 1.1e-14 83.6 46 84.8
vmacro07800 Vaccinium macrocarpon HOM05D001433 ORTHO05D005172 1.5e-14 83.2 44 88.6
Nitab4.5_0000415g0090 Nicotiana tabacum HOM05D001433 ORTHO05D005172 2.5e-14 82.4 44 84.1
Prupe.7G039100 Prunus persica HOM05D001433 ORTHO05D005172 2.5e-14 82.4 44 86.4
CiPaw.09G047200 Carya illinoinensis HOM05D001433 ORTHO05D005172 3.3e-14 82.0 44 88.6
TWI74G1565 Tripterygium wilfordii HOM05D001433 ORTHO05D005172 3.3e-14 82.0 44 86.4
ATR0745G061 Amborella trichopoda HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 86.4
CSS0044676 Camellia sinensis var. sinensis HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 86.4
Cfa020008 Carpinus fangiana HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 84.1
CiPaw.10G039900 Carya illinoinensis HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 84.1
Haze_20222 Corylus avellana HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 84.1
TWI77G0540 Tripterygium wilfordii HOM05D001433 ORTHO05D005172 4.3e-14 81.6 44 86.4
Ah.04g150990 Amaranthus hybridus HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
Dinv09721 Davidia involucrata HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 88.6
Nitab4.5_0002936g0040 Nicotiana tabacum HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
Solyc03g063560.3 Solanum lycopersicum HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
Sopen03g016230 Solanum pennellii HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
PGSC0003DMG400009698 Solanum tuberosum HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
GSVIVG01033621001 Vitis vinifera HOM05D001433 ORTHO05D005172 5.7e-14 81.3 44 84.1
Aa31LG1G21190 Aethionema arabicum HOM05D001433 ORTHO05D005172 7.4e-14 80.9 44 84.1
DCAR_020564 Daucus carota HOM05D001433 ORTHO05D005172 7.4e-14 80.9 44 81.8
Duzib128G0892 Durio zibethinus HOM05D001433 ORTHO05D005172 7.4e-14 80.9 44 84.1
PGR031G1148 Punica granatum HOM05D001433 ORTHO05D005172 7.4e-14 80.9 44 81.8
Atru.chr1.1446 Acer truncatum HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 84.1
CANSAT64G0825 Cannabis sativa HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 84.1
Peaxi162Scf00076g00532 Petunia axillaris HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 81.8
RcHm_v2.0_Chr2g0125471 Rosa chinensis HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 84.1
Hund19100 Selenicereus undatus HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 81.8
VMungo1383G1431 Vigna mungo HOM05D001433 ORTHO05D005172 9.7e-14 80.5 44 84.1
CARHR209130 Cardamine hirsuta HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 84.1
AUR62030325 Chenopodium quinoa HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 79.5
Ciclev10004137m.g Citrus clementina HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 81.8
FAN09G4168 Fragaria x ananassa HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 84.1
Lalb_Chr22g0357391 Lupinus albus HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 84.1
Sp6g38610 Schrenkiella parvula HOM05D001433 ORTHO05D005172 1.3e-13 80.1 44 84.1
AUR62018342 Chenopodium quinoa HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 79.5
Ca_08395_v3 Cicer arietinum L. HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
ClCG10G016190 Citrullus lanatus HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
COL.COLO4_36597 Corchorus olitorius HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 81.8
MELO3C009759.2 Cucumis melo HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
CsaV3_3G040230 Cucumis sativus L. HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
Gohir.A01G193200 Gossypium hirsutum HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 81.8
Gohir.D01G183500 Gossypium hirsutum HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 81.8
Gorai.002G226600 Gossypium raimondii HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 81.8
Nn7g36729 Nelumbo nucifera HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 81.8
Psat3g078160 Pisum sativum HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
Sed0001320 Sechium edule HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
TPR.G30627 Trifolium pratense HOM05D001433 ORTHO05D005172 1.7e-13 79.7 44 84.1
Lj1g0005026 Lotus japonicus HOM05D001433 ORTHO05D005172 2.2e-13 79.3 44 84.1
Manes.09G005600 Manihot esculenta HOM05D001433 ORTHO05D005172 2.2e-13 79.3 44 81.8
Medtr7g089970 Medicago truncatula HOM05D001433 ORTHO05D005172 2.2e-13 79.3 44 81.8
Phvul.001G123900 Phaseolus vulgaris HOM05D001433 ORTHO05D005172 2.2e-13 79.3 44 81.8
AL6G13760 Arabidopsis lyrata HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
arahy.Tifrunner.gnm1.ann1.1I7GZ6 Arachis hypogaea HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 79.5
arahy.Tifrunner.gnm1.ann1.NBNL1F Arachis hypogaea HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 79.5
BcaC06g32116 Brassica carinata HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
A10p32000 Brassica napus HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
C09p72720 Brassica napus HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
BolC9t60011H Brassica oleracea HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
Eucgr.A02249 Eucalyptus grandis HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 79.5
Thhalv10012425m.g Eutrema salsugineum HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
FvH4_6g25460 Fragaria vesca HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
FAN02G2678 Fragaria x ananassa HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
FAN09G1016 Fragaria x ananassa HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
FAN16G2131 Fragaria x ananassa HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
FAN16G3657 Fragaria x ananassa HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
Glyma.19G130800 Glycine max HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
MD14G1087500 Malus domestica HOM05D001433 ORTHO05D005172 2.8e-13 79.0 44 81.8
Oeu063779.1 Olea europaea HOM05D001433 ORTHO05D005172 2.8e-13 79.0 47 78.7
Cc06_g19130 Coffea canephora HOM05D001433 ORTHO05D005172 3.7e-13 78.6 44 81.8
Duzib093G1354 Durio zibethinus HOM05D001433 ORTHO05D005172 3.7e-13 78.6 44 81.8
AT5G04140 Arabidopsis thaliana HOM05D001433 ORTHO05D005172 4.8e-13 78.2 44 81.8
Migut.J01662 Erythranthe guttata HOM05D001433 ORTHO05D005172 4.8e-13 78.2 44 77.3
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 6.3e-13 77.8 44 79.5
Glyma.03G128300 Glycine max HOM05D001433 ORTHO05D005172 6.3e-13 77.8 44 79.5
Sabra16G0039100 Salix brachista HOM05D001433 ORTHO05D005172 6.3e-13 77.8 44 77.3
SEGI_19961 Sequoiadendron giganteum HOM05D001433 ORTHO05D005172 6.3e-13 77.8 44 84.1
Thecc.05G135300 Theobroma cacao HOM05D001433 ORTHO05D005172 6.3e-13 77.8 44 77.3
BraA10t45244Z Brassica rapa HOM05D001433 ORTHO05D005172 8.2e-13 77.4 44 79.5
Carub.0006s0309 Capsella rubella HOM05D001433 ORTHO05D005172 8.2e-13 77.4 44 79.5
Cpa.g.sc5.173 Carica papaya HOM05D001433 ORTHO05D005172 8.2e-13 77.4 43 79.1
PSO339G5940 Papaver somniferum HOM05D001433 ORTHO05D005172 8.2e-13 77.4 44 79.5
PSO384G1328 Papaver somniferum HOM05D001433 ORTHO05D005172 8.2e-13 77.4 44 79.5
Lsat_1_v5_gn_5_158001 Lactuca sativa HOM05D001433 ORTHO05D005172 1.1e-12 77.0 44 81.8
SalBow6G4365 Salvia bowleyana HOM05D001433 ORTHO05D005172 1.1e-12 77.0 44 77.3
TAR636G2034 Trochodendron aralioides HOM05D001433 ORTHO05D005172 1.4e-12 76.6 44 86.4
MSTRG.19811 Avicennia marina HOM05D001433 ORTHO05D005172 1.8e-12 76.3 44 75.0
unitig_37.g12790 Utricularia gibba HOM05D001433 ORTHO05D005172 1.8e-12 76.3 44 75.0
BcaB01g03483 Brassica carinata HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
BcaC01g05353 Brassica carinata HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
A04p31400 Brassica napus HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
C03p27570 Brassica napus HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
BolC3t15130H Brassica oleracea HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
BraA04t18598Z Brassica rapa HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
Carub.0004s2353 Capsella rubella HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
CARHR136310 Cardamine hirsuta HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
Thhalv10016134m.g Eutrema salsugineum HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 84.1
Potri.016G036900 Populus trichocarpa HOM05D001433 ORTHO05D005172 2.4e-12 75.9 44 77.3
A03p23150 Brassica napus HOM05D001433 ORTHO05D005172 3.1e-12 75.5 50 78.0
BraA03t11535Z Brassica rapa HOM05D001433 ORTHO05D005172 3.1e-12 75.5 50 78.0
HanXRQChr03g0061571 Helianthus annuus HOM05D001433 ORTHO05D005172 3.1e-12 75.5 44 79.5
Aa31LG3G780 Aethionema arabicum HOM05D001433 ORTHO05D005172 4.1e-12 75.1 44 81.8
Potri.006G038400 Populus trichocarpa HOM05D001433 ORTHO05D005172 4.1e-12 75.1 44 77.3
Sabra06G0025800 Salix brachista HOM05D001433 ORTHO05D005172 4.1e-12 75.1 44 77.3
BcaC02g12842 Brassica carinata HOM05D001433 ORTHO05D005172 5.3e-12 74.7 44 81.8
C04p68830 Brassica napus HOM05D001433 ORTHO05D005172 5.3e-12 74.7 44 81.8
BolC4t28386H Brassica oleracea HOM05D001433 ORTHO05D005172 5.3e-12 74.7 44 81.8
Lj1A1093G56 Lonicera japonica HOM05D001433 ORTHO05D005172 5.3e-12 74.7 43 81.4
THA.LOC104816414 Tarenaya hassleriana HOM05D001433 ORTHO05D005172 5.3e-12 74.7 44 77.3
ECA248G1696 Erigeron canadensis HOM05D001433 ORTHO05D005172 9.1e-12 73.9 44 77.3
Aqoxy2G00387 Aquilegia oxysepala HOM05D001433 ORTHO05D005172 1.2e-11 73.6 44 75.0
Sp4g23520 Schrenkiella parvula HOM05D001433 ORTHO05D005172 1.2e-11 73.6 44 81.8
AL4G39190 Arabidopsis lyrata HOM05D001433 ORTHO05D005172 2.0e-11 72.8 44 81.8
AT2G41220 Arabidopsis thaliana HOM05D001433 ORTHO05D005172 2.0e-11 72.8 44 81.8
CAN.G85.3 Capsicum annuum HOM05D001433 ORTHO05D005172 2.6e-11 72.4 40 82.5
SGA_v2.0_scaffold105G30296 Striga asiatica HOM05D001433 ORTHO05D005172 3.4e-11 72.0 44 72.7
Zm00001eb329710 Zea mays HOM05D001433 ORTHO05D005172 3.4e-11 72.0 44 72.7
HPP92_006727 Vanilla planifolia HOM05D001433 ORTHO05D005172 4.5e-11 71.6 44 70.5
CDE09G0905 Ceratophyllum demersum HOM05D001433 ORTHO05D005172 7.7e-11 70.9 44 68.2
Pp3c7_6520 Physcomitrium patens HOM05D001433 ORTHO05D005172 3.8e-10 68.6 43 72.1
SMO232G0104 Selaginella moellendorffii HOM05D001433 ORTHO05D005172 1.4e-09 66.6 44 65.9
Pp3c8_17940 Physcomitrium patens HOM05D001433 ORTHO05D005172 1.9e-09 66.2 44 65.9
Mapoly0023s0027 Marchantia polymorpha HOM05D001433 ORTHO05D005172 3.2e-09 65.5 44 65.9
Os07g0658400 Oryza sativa ssp. japonica HOM05D001433 ORTHO05D005172 3.2e-09 65.5 44 63.6
Hund24592 Selenicereus undatus HOM05D001433 ORTHO05D005172 1.8e-07 59.7 30 86.7
AagrBONN_evm.TU.Sc2ySwM_117.1450 Anthoceros agrestis HOM05D001433 ORTHO05D005172 4.4e-06 55.1 44 54.5


User provided reference genes

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