Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 0.0e+00 1533.9 828 100.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.2e-273 944.9 860 60.2
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.1e-264 916.0 852 59.9
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.5e-262 909.8 850 58.1
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 4.3e-262 908.3 856 61.8
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.1e-260 903.7 808 60.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.4e-260 902.5 827 61.3
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.0e-259 899.4 793 62.2
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 5.0e-258 894.8 794 59.4
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 1.0e-255 887.1 850 60.1
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.7e-253 879.8 841 60.2
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 2.8e-253 879.0 828 57.2
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.1e-252 877.1 854 57.6
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-252 876.7 791 61.9
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.4e-252 876.7 791 61.8
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 7.0e-252 874.4 850 58.2
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 9.1e-252 874.0 801 59.8
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.0e-251 872.8 874 55.9
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 2.0e-251 872.8 847 59.5
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.9e-250 869.0 796 60.4
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 8.5e-250 867.5 853 57.8
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 8.5e-250 867.5 842 58.8
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.2e-248 863.6 888 56.4
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.1e-248 862.8 841 57.8
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 8.0e-248 860.9 796 56.8
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 8.8e-247 857.4 804 57.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.1e-246 857.1 800 56.5
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 9.7e-246 854.0 861 57.6
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 2.2e-245 852.8 796 60.1
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.4e-244 850.1 805 58.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.4e-244 849.4 816 57.1
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 2.0e-243 846.3 835 56.9
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.9e-242 842.4 804 55.1
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 3.8e-242 842.0 859 54.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.0e-242 841.6 841 56.0
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.5e-242 841.3 805 55.9
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.5e-241 839.3 804 59.5
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 5.5e-241 838.2 829 56.0
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.2e-240 837.0 860 57.0
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.2e-240 837.0 801 55.8
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.1e-240 836.3 792 59.0
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.6e-240 835.5 792 58.3
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 8.0e-240 834.3 803 55.0
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.4e-239 833.6 855 56.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 5.2e-239 831.6 792 58.3
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.2e-238 830.5 854 53.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.5e-238 830.1 856 56.1
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 2.6e-238 829.3 803 55.4
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 2.6e-238 829.3 847 54.0
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 3.1e-236 822.4 802 55.4
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 7.0e-236 821.2 796 55.8
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.6e-235 820.1 841 54.3
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.8e-234 815.5 864 55.9
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 3.2e-233 812.4 802 55.4
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 7.2e-233 811.2 788 55.8
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 7.2e-233 811.2 791 57.4
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.1e-232 809.7 833 55.0
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 6.1e-232 808.1 838 56.3
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.0e-232 807.7 838 55.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.8e-231 806.6 840 53.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.5e-230 803.5 855 52.4
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.5e-225 786.9 793 54.5
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 5.2e-223 778.5 770 53.9
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 6.8e-223 778.1 798 55.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.5e-222 776.9 809 56.1
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.4e-222 775.8 814 55.0
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 5.7e-222 775.0 816 51.8
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.8e-220 770.0 838 54.3
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 5.4e-220 768.5 826 53.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.0e-219 766.5 806 52.4
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.0e-219 766.5 827 55.5
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 4.5e-219 765.4 841 54.0
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 5.9e-219 765.0 817 54.8
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.9e-218 762.7 791 55.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 8.6e-218 761.1 844 51.7
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-217 759.6 832 52.2
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.2e-216 757.3 788 54.8
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.8e-216 756.1 839 51.3
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 3.6e-216 755.7 789 54.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 6.1e-216 755.0 852 53.6
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 3.1e-215 752.7 825 52.8
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 3.4e-214 749.2 833 54.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.9e-213 746.1 845 53.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 5.4e-212 741.9 796 53.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.4e-212 741.9 792 52.0
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 2.3e-210 736.5 660 58.2
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 4.6e-203 712.2 796 53.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.5e-201 706.4 824 53.3
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 3.3e-201 706.1 807 49.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 9.5e-201 704.5 808 52.2
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.7e-200 702.2 779 52.4
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 2.0e-198 696.8 555 63.2
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 7.1e-196 688.3 753 52.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.5e-193 680.6 807 47.3
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 4.3e-185 652.5 857 47.4
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 4.4e-182 642.5 848 46.3
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.6e-171 605.9 527 59.2
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.8e-170 604.0 600 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 5.1e-162 575.9 858 39.7
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 3.3e-161 573.2 678 49.6
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 5.8e-158 562.4 440 65.9
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 6.5e-157 558.9 832 41.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 4.2e-148 529.6 803 40.8
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.8e-146 524.2 823 38.5
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.4e-137 493.0 534 52.6
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 3.1e-135 486.9 580 46.7
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 4.8e-128 463.0 387 63.8
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 2.0e-126 457.6 773 36.9
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.0e-122 443.7 495 54.7
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 4.0e-106 390.2 474 51.9
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 3.4e-105 387.1 475 48.8
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-99 368.6 416 54.6
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 2.4e-95 354.4 393 52.2
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.3e-90 337.8 421 49.2
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.9e-76 291.6 479 42.2
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.5e-73 282.0 585 31.8
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.9e-68 265.0 350 50.6
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 4.8e-67 260.4 221 56.6
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.9e-48 197.2 195 50.8
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 7.1e-47 193.4 187 56.1
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.7e-27 129.0 204 38.2
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 8.2e-27 126.7 479 22.1
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.8e-26 125.6 94 59.6
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.2e-23 114.4 186 40.3
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 9.4e-23 113.2 200 35.0
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 9.4e-23 113.2 80 67.5
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 3.7e-19 101.3 129 45.7
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 3.7e-19 101.3 154 44.8
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 1.7e-16 92.4 178 40.4
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.5e-15 89.4 106 43.4
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 1.2e-14 86.3 359 31.2
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 8.0e-14 83.6 61 72.1
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 8.0e-14 83.6 61 72.1
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 9.7e-12 76.6 117 48.7
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 9.7e-12 76.6 117 48.7
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 2.2e-08 65.5 82 41.5
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 8.5e-08 63.5 80 41.2
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 1.5e-07 62.8 66 45.5
MCO03G286 Micromonas commoda HOM05D005319 ORTHO05D006632 4.2e-07 61.2 70 37.1
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 7.2e-07 60.5 82 42.7
Cfa024121 Carpinus fangiana HOM05D000285 ORTHO05D001253 1.2e-06 59.7 112 35.7
ECA232G2518 Erigeron canadensis HOM05D006053 ORTHO05D008381 1.6e-06 59.3 91 38.5
Pp3c27_7380 Physcomitrium patens HOM05D002279 ORTHO05D002644 2.7e-06 58.5 231 25.1
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 3.6e-06 58.2 326 22.7
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 6.1e-06 57.4 62 50.0
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 6.1e-06 57.4 80 38.8
PRCOL_00005318 Prasinoderma coloniale HOM05D002097 ORTHO05D002248 6.1e-06 57.4 72 34.7
Cre04.g213905 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 8.0e-06 57.0 80 36.2
Cre06.g275100 Chlamydomonas reinhardtii HOM05D002658 ORTHO05D003000 8.0e-06 57.0 89 34.8
FAN23G2605 Fragaria x ananassa HOM05D002097 ORTHO05D002248 8.0e-06 57.0 105 27.6
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 8.0e-06 57.0 105 34.3
Sabra07G0007500 Salix brachista HOM05D002097 ORTHO05D002248 8.0e-06 57.0 105 30.5
Zm00001eb403170 Zea mays HOM05D002097 ORTHO05D002248 8.0e-06 57.0 107 28.0


User provided reference genes

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