Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 1.3e-190 669.8 399 100.0
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 2.2e-150 536.2 396 79.0
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 1.4e-149 533.5 327 76.5
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 2.6e-148 529.3 327 75.8
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 3.5e-148 528.9 327 75.2
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 5.0e-147 525.0 396 72.7
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 5.0e-147 525.0 396 79.3
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 5.0e-147 525.0 327 76.5
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 1.1e-146 523.9 327 75.2
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 2.5e-146 522.7 327 75.8
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 3.2e-146 522.3 396 72.2
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 4.2e-146 521.9 396 76.8
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 5.5e-146 521.5 326 74.5
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 9.4e-146 520.8 327 74.3
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 1.2e-145 520.4 326 74.8
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 1.6e-145 520.0 326 75.5
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 1.0e-144 517.3 327 75.8
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 1.4e-144 516.9 396 77.8
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 6.7e-144 514.6 327 73.4
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 6.7e-144 514.6 396 71.5
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 8.8e-144 514.2 327 74.6
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 1.1e-143 513.8 396 77.0
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 1.5e-143 513.5 327 74.3
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 4.4e-143 511.9 327 74.3
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 5.7e-143 511.5 322 75.2
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 5.7e-143 511.5 327 72.8
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 9.7e-143 510.8 396 77.5
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 2.8e-142 509.2 321 74.8
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 2.8e-142 509.2 327 74.0
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 3.7e-142 508.8 327 72.8
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 3.7e-142 508.8 327 72.5
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 4.8e-142 508.4 396 71.0
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 4.8e-142 508.4 396 77.0
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 1.8e-141 506.5 324 75.0
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 1.8e-141 506.5 329 72.9
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 3.1e-141 505.8 327 73.7
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 4.1e-141 505.4 396 70.5
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 5.3e-141 505.0 396 70.5
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 7.0e-141 504.6 318 75.2
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 7.0e-141 504.6 327 73.1
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 1.2e-140 503.8 320 74.4
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 1.6e-140 503.4 322 73.0
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 2.0e-140 503.1 327 71.3
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 3.5e-140 502.3 396 68.9
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 7.7e-140 501.1 326 72.7
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 1.3e-139 500.4 396 75.8
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 1.3e-139 500.4 325 73.8
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 2.2e-139 499.6 324 74.1
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 5.0e-139 498.4 327 71.9
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 5.0e-139 498.4 327 71.6
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 8.5e-139 497.7 396 75.8
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 5.5e-138 495.0 327 71.9
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 9.4e-138 494.2 327 72.5
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 8.0e-137 491.1 327 71.6
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 1.4e-136 490.3 326 71.5
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 1.5e-135 486.9 396 74.5
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 2.6e-135 486.1 329 71.7
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 2.6e-135 486.1 396 74.2
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 9.8e-135 484.2 396 74.0
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 2.2e-134 483.0 328 70.1
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 3.1e-133 479.2 325 67.4
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 9.1e-133 477.6 310 74.5
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 1.2e-132 477.2 327 69.1
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 2.7e-132 476.1 398 72.6
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 3.5e-132 475.7 327 69.4
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 7.7e-132 474.6 396 68.4
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 1.7e-131 473.4 317 69.7
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 1.1e-130 470.7 306 73.5
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 1.5e-130 470.3 397 72.3
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 1.9e-130 469.9 396 73.0
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 2.5e-130 469.5 396 73.0
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 1.2e-129 467.2 327 68.8
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 1.2e-129 467.2 317 70.3
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 1.4e-128 463.8 320 68.4
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 1.4e-128 463.8 327 69.1
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 4.0e-128 462.2 320 68.1
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 4.0e-128 462.2 327 67.6
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 5.2e-128 461.8 325 65.5
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 4.9e-126 455.3 327 67.0
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 1.1e-125 454.1 398 69.8
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 1.4e-125 453.8 323 67.5
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 3.1e-125 452.6 284 75.7
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 2.0e-124 449.9 311 67.8
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 1.2e-121 440.7 327 63.9
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 3.6e-121 439.1 327 65.4
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 3.5e-116 422.5 327 63.0
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 7.8e-116 421.4 323 62.5
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 1.7e-115 420.2 257 76.7
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 1.6e-113 413.7 328 61.9
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 2.9e-110 402.9 322 62.7
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 1.2e-103 380.9 321 59.2
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 2.0e-103 380.2 320 59.4
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 5.4e-101 372.1 320 58.4
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 2.3e-99 366.7 319 57.1
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 2.1e-89 333.6 303 56.1
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 3.3e-82 309.7 331 49.8
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 6.2e-81 305.4 202 70.3
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 4.3e-66 256.1 332 43.7
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.3e-58 229.6 331 40.8
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 1.8e-56 224.2 146 72.6
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 5.3e-56 222.6 337 40.1
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.5e-55 219.5 337 38.9
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 5.0e-54 216.1 337 36.8
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.8e-43 178.7 343 35.3
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 1.1e-42 178.3 341 32.8
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 2.9e-38 163.7 268 38.4
BcaB05g22992 Brassica carinata HOM05D001993 ORTHO05D009037 1.2e-31 141.7 129 55.8
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.2e-31 141.7 136 49.3
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 7.7e-31 139.0 128 50.0
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 4.0e-19 100.1 128 39.1
Os02g0798800 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 3.7e-17 93.6 177 33.9
Nitab4.5_0003497g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 1.4e-08 65.1 115 28.7
Prupe.6G229800 Prunus persica HOM05D001905 ORTHO05D001820 2.4e-08 64.3 314 27.1
Sc20g0006750 Simmondsia chinensis HOM05D002125 ORTHO05D002105 2.4e-08 64.3 77 37.7
MD15G1288000 Malus domestica HOM05D001905 ORTHO05D001820 4.1e-08 63.5 345 26.4
AUR62004152 Chenopodium quinoa HOM05D002503 ORTHO05D002810 7.0e-08 62.8 306 24.8
Sabra16G0130000 Salix brachista HOM05D002125 ORTHO05D002105 1.6e-07 61.6 81 34.6
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 2.0e-07 61.2 82 32.9
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 2.0e-07 61.2 84 34.5
MD02G1178100 Malus domestica HOM05D001905 ORTHO05D001820 2.7e-07 60.8 344 25.9
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 2.7e-07 60.8 84 34.5
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 2.7e-07 60.8 84 34.5
HanXRQChr16g0511061 Helianthus annuus HOM05D002125 ORTHO05D002105 4.5e-07 60.1 84 34.5
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 4.5e-07 60.1 333 24.9
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 4.5e-07 60.1 84 34.5
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 5.9e-07 59.7 80 33.8
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 7.7e-07 59.3 84 34.5
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 7.7e-07 59.3 84 34.5
PGR142G1182 Punica granatum HOM05D001818 ORTHO05D001780 7.7e-07 59.3 127 31.5
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 7.7e-07 59.3 84 33.3
CSS0015901 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.0e-06 58.9 84 33.3
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.0e-06 58.9 84 33.3
Glyma.14G086000 Glycine max HOM05D001905 ORTHO05D001820 1.0e-06 58.9 323 24.1
Lalb_Chr11g0065581 Lupinus albus HOM05D001905 ORTHO05D001820 1.0e-06 58.9 266 24.4
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 1.0e-06 58.9 321 24.9
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 1.0e-06 58.9 252 23.0
AUR62013695 Chenopodium quinoa HOM05D002503 ORTHO05D002810 1.3e-06 58.5 306 24.5
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.7e-06 58.2 77 32.5
Peaxi162Scf00264g00860 Petunia axillaris HOM05D002125 ORTHO05D002105 2.3e-06 57.8 78 33.3
SGA_v2.0_scaffold85G26673 Striga asiatica HOM05D002125 ORTHO05D002105 2.3e-06 57.8 81 33.3
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 2.9e-06 57.4 82 35.4
RcHm_v2.0_Chr2g0106581 Rosa chinensis HOM05D001905 ORTHO05D001820 3.8e-06 57.0 345 24.3
COL.COLO4_10116 Corchorus olitorius HOM05D001905 ORTHO05D001820 5.0e-06 56.6 341 24.9
Thecc.08G001200 Theobroma cacao HOM05D001905 ORTHO05D001820 5.0e-06 56.6 323 23.5
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 6.6e-06 56.2 318 24.5
Thhalv10011152m.g Eutrema salsugineum HOM05D001905 ORTHO05D001820 8.6e-06 55.8 333 24.6
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 8.6e-06 55.8 239 25.1
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 8.6e-06 55.8 79 32.9


User provided reference genes

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