Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 2497.2 1388 100.0
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1313.1 1359 60.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1297.0 1385 59.3
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1288.9 1387 58.9
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1253.0 1398 56.0
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1251.9 1370 56.4
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1228.4 1329 58.7
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1177.5 1291 57.9
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1171.0 1230 61.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1170.6 1385 55.4
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1168.3 1380 56.0
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1157.9 1404 53.4
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1157.9 1177 61.5
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1151.3 1347 54.3
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1147.9 1374 54.9
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1147.1 1254 59.2
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1144.0 1322 55.7
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1133.6 1384 54.3
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1129.0 1378 54.4
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1116.7 1309 56.0
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1115.5 1344 56.8
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1113.2 1368 54.5
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1105.1 1362 53.3
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1102.8 1278 56.3
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1102.8 1325 53.5
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1099.7 1278 56.1
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1097.8 1365 51.7
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1091.3 1264 56.3
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1089.7 1386 51.8
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1088.6 1331 55.4
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1082.4 1330 55.4
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1082.0 1353 52.8
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1078.5 1337 54.1
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1076.6 1270 55.1
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1075.5 1279 55.8
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 7.2e-310 1067.8 1281 55.0
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 1.4e-308 1063.5 1388 52.4
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 8.8e-308 1060.8 1322 54.2
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 2.0e-307 1059.7 1376 51.4
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 2.6e-307 1059.3 1401 51.2
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 9.7e-307 1057.4 1337 53.3
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 1.7e-306 1056.6 1385 51.6
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 5.9e-304 1048.1 1276 53.9
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 1.3e-303 1047.0 1356 52.2
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 5.0e-303 1045.0 1393 50.7
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 1.1e-302 1043.9 1218 56.1
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 3.2e-302 1042.3 1399 51.1
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 4.7e-301 1038.5 1335 52.1
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 1.0e-300 1037.3 1326 54.3
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 1.0e-300 1037.3 1372 51.2
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 2.3e-300 1036.2 1357 52.2
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 7.4e-299 1031.2 1336 53.1
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 1.7e-298 1030.0 1210 56.4
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 2.2e-298 1029.6 1336 53.7
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 1.1e-297 1027.3 1222 55.2
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 2.4e-297 1026.2 1333 53.3
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 7.0e-297 1024.6 1211 54.9
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.6e-296 1022.7 1333 53.2
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.3e-295 1020.4 1234 54.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 1.7e-295 1020.0 1333 53.0
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 3.8e-295 1018.8 1315 50.6
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.1e-294 1017.3 1263 54.6
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 1.5e-294 1016.9 1379 50.5
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 1.5e-294 1016.9 1179 55.0
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 7.2e-294 1014.6 1331 50.0
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 9.8e-283 977.6 1228 52.0
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 3.4e-275 952.6 1262 52.4
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 1.6e-272 943.7 1030 58.1
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 2.6e-267 926.4 1069 57.2
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 4.4e-267 925.6 1070 56.5
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 1.3e-266 924.1 1067 56.1
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.9e-265 920.2 1130 53.6
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 4.3e-262 909.1 1415 48.3
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 2.9e-258 896.3 1016 58.2
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 2.5e-246 856.7 1142 53.0
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.5e-246 856.7 1028 55.9
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 2.4e-241 840.1 776 64.0
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 2.4e-241 840.1 1063 52.6
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 4.3e-222 776.2 775 60.0
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.6e-222 775.0 779 63.8
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 3.7e-189 666.8 955 46.4
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 3.5e-187 660.2 1304 40.5
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 2.9e-178 630.6 1163 41.8
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 7.5e-150 536.2 859 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 4.3e-129 467.2 812 41.1
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.0e-122 444.5 519 53.9
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.1e-121 442.6 532 54.7
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-115 422.5 561 48.8
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.4e-108 398.3 1139 32.1
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.8e-96 358.2 554 45.3
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.8e-56 225.3 324 47.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-54 219.9 467 41.3
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.5e-41 176.4 101 83.2
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 8.3e-40 170.6 318 37.7
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 5.0e-37 161.4 151 58.9
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.3e-36 158.3 295 38.3
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.6e-35 156.4 186 51.6
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-32 146.4 244 38.1
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-21 109.0 114 56.1
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.1e-20 107.1 61 77.0
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 5.6e-20 104.8 1305 21.3
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.2e-19 101.3 114 53.5
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.1e-18 100.5 287 33.8
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.8e-16 92.0 105 57.1
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 1.0e-13 84.0 97 46.4
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 5.1e-13 81.6 57 63.2
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 5.1e-13 81.6 182 31.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 9.6e-12 77.4 57 63.2
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.3e-08 67.0 38 81.6
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.4e-07 63.5 37 75.7


User provided reference genes

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