Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 9.3e-170 600.1 303 100.0
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 5.0e-139 498.0 293 84.0
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 6.5e-139 497.7 293 84.0
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 1.1e-138 496.9 292 84.2
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 3.2e-138 495.4 292 84.2
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.2e-138 495.4 292 84.2
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 4.2e-138 495.0 293 82.9
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 7.2e-138 494.2 292 84.2
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 9.3e-138 493.8 292 84.2
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.1e-137 492.7 295 84.4
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 2.7e-137 492.3 295 83.1
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 6.1e-137 491.1 292 83.2
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.0e-136 490.3 293 84.3
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.3e-136 490.0 296 83.1
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.3e-136 489.2 294 82.7
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 3.0e-136 488.8 295 82.0
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 3.9e-136 488.4 295 82.0
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.1e-135 486.9 294 83.0
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 2.5e-135 485.7 292 82.2
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 2.5e-135 485.7 292 82.9
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 3.3e-135 485.3 292 82.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.3e-135 485.0 295 82.4
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.3e-135 485.0 295 82.4
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.2e-134 482.6 294 82.7
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.2e-134 482.6 296 82.4
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.8e-134 482.3 295 81.4
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.7e-134 481.9 292 82.2
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 3.7e-134 481.9 296 81.8
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 6.3e-134 481.1 294 82.0
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 6.3e-134 481.1 295 81.0
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 6.3e-134 481.1 294 81.6
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.4e-133 479.9 297 82.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 6.9e-133 477.6 293 80.2
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 6.9e-133 477.6 293 81.6
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 2.0e-132 476.1 294 81.3
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.6e-132 475.7 292 81.8
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 3.4e-132 475.3 296 82.4
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 4.5e-132 474.9 296 81.1
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 5.9e-132 474.6 334 73.7
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 7.7e-132 474.2 295 82.0
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.0e-131 473.8 334 73.4
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.7e-131 473.0 334 73.7
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.7e-131 473.0 334 73.1
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.7e-131 473.0 293 80.9
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 2.2e-131 472.6 293 81.6
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.2e-131 472.6 296 79.7
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 3.8e-131 471.9 295 81.7
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.5e-131 471.1 293 80.2
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 8.5e-131 470.7 295 78.3
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 8.5e-131 470.7 296 78.7
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 1.1e-130 470.3 296 80.4
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.4e-130 469.9 293 79.5
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 1.4e-130 469.9 296 78.7
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.4e-130 469.9 292 81.2
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.9e-130 469.5 293 80.2
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.9e-130 469.5 294 78.2
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.9e-130 469.5 292 81.5
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 2.5e-130 469.2 296 78.7
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 2.5e-130 469.2 296 78.0
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 4.2e-130 468.4 293 79.2
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 5.5e-130 468.0 293 80.5
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 7.2e-130 467.6 295 78.3
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 7.2e-130 467.6 292 80.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 7.2e-130 467.6 293 78.2
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 7.2e-130 467.6 296 78.4
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 7.2e-130 467.6 294 81.0
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 9.4e-130 467.2 296 79.4
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 9.4e-130 467.2 292 80.5
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.2e-129 466.8 293 79.2
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 2.1e-129 466.1 294 78.6
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 2.1e-129 466.1 294 78.6
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 2.1e-129 466.1 294 78.6
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.1e-129 466.1 294 78.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.7e-129 465.7 271 84.9
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 2.7e-129 465.7 296 78.0
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 3.6e-129 465.3 295 79.3
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 3.6e-129 465.3 292 79.8
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 3.6e-129 465.3 293 78.5
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 4.6e-129 464.9 293 79.2
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.0e-128 463.8 292 80.1
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.0e-128 463.8 294 79.3
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.4e-128 463.4 293 79.2
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 3.0e-128 462.2 295 78.3
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 3.9e-128 461.8 294 78.2
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 6.7e-128 461.1 294 79.3
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.1e-127 460.3 292 78.4
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.5e-127 459.9 294 76.9
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 2.6e-127 459.1 291 78.0
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 5.7e-127 458.0 293 79.5
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 5.7e-127 458.0 295 79.7
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 9.7e-127 457.2 293 78.5
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 9.7e-127 457.2 299 76.6
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.2e-126 456.1 283 79.9
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 2.8e-126 455.7 293 77.5
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 2.8e-126 455.7 337 71.5
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 4.8e-126 454.9 293 77.8
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.4e-125 453.4 263 85.2
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.8e-125 453.0 292 78.8
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 2.4e-125 452.6 292 78.4
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 5.3e-125 451.4 317 73.2
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.3e-125 451.4 295 78.6
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 9.1e-125 450.7 298 76.2
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 9.1e-125 450.7 294 78.2
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.5e-124 449.9 296 78.0
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 2.0e-124 449.5 287 78.0
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.6e-124 449.1 318 72.6
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.0e-123 447.2 297 77.4
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.3e-123 446.8 297 77.1
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.3e-123 446.8 263 83.7
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 1.7e-123 446.4 294 75.5
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.9e-123 445.7 292 75.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 2.9e-123 445.7 287 78.4
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.1e-122 443.7 265 84.2
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.2e-122 441.8 303 75.9
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 9.4e-122 440.7 302 74.2
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 9.4e-122 440.7 302 74.2
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 9.4e-122 440.7 302 74.2
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 9.4e-122 440.7 296 75.7
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.6e-121 439.9 283 79.2
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 7.9e-121 437.6 303 74.6
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.9e-120 435.3 293 74.1
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 5.2e-120 434.9 318 71.1
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 8.8e-120 434.1 294 75.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 8.8e-120 434.1 292 73.6
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.6e-119 432.6 292 74.7
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 2.6e-119 432.6 295 75.3
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.3e-118 430.3 267 80.1
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.1e-117 425.6 295 71.5
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 7.0e-117 424.5 297 70.7
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.5e-116 422.2 294 69.7
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 5.9e-116 421.4 296 71.3
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 7.7e-116 421.0 295 70.2
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.0e-115 420.6 292 69.9
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 1.3e-115 420.2 294 69.7
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.7e-115 419.9 294 69.0
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.9e-115 419.1 286 74.5
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 5.0e-115 418.3 292 69.5
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 5.0e-115 418.3 292 69.5
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.1e-114 417.2 293 70.0
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 7.2e-114 414.5 313 67.4
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.0e-112 410.6 294 71.1
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 6.7e-112 407.9 273 73.6
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.3e-111 405.6 257 82.1
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.0e-109 397.9 266 75.2
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.7e-108 396.0 250 78.8
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.0e-107 394.0 258 73.6
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 8.5e-107 391.0 250 75.2
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.0e-104 382.5 237 80.6
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 5.2e-104 381.7 250 76.4
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 9.8e-103 377.5 296 65.5
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.2e-100 370.5 272 67.6
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 5.9e-100 368.2 202 90.1
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.7e-99 366.7 203 88.7
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 9.5e-90 334.3 238 70.6
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 5.2e-88 328.6 219 75.3
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 5.6e-82 308.5 309 58.9
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 4.9e-78 295.4 247 63.6
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-77 293.9 224 69.2
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-72 277.3 156 87.8
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 3.1e-72 276.2 147 91.8
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 5.8e-71 271.9 162 84.6
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 3.5e-60 236.1 150 81.3
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 4.6e-60 235.7 147 83.0
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.0e-59 234.6 185 64.9
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 1.0e-51 208.0 120 85.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 2.5e-50 203.4 190 58.4
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 2.4e-48 196.8 153 70.6
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.4e-45 186.8 165 62.4
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 2.7e-44 183.3 123 76.4
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 8.2e-33 145.2 149 54.4
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 1.2e-28 131.3 75 85.3
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 1.8e-27 127.5 187 38.0
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 2.0e-23 114.0 73 79.5
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 7.6e-23 112.1 72 80.6
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 2.2e-14 84.0 49 85.7
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 1.4e-13 81.3 47 76.6
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 3.6e-12 76.6 37 91.9
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 1.7e-09 67.8 82 56.1
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.4e-08 64.7 57 63.2
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.4e-08 64.7 57 63.2
CSS0000585 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D113077 4.5e-07 59.7 80 48.8
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.5e-06 55.5 50 64.0


User provided reference genes

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