Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005130 Simmondsia chinensis HOM05D003444 ORTHO05D003963 4.4e-46 187.6 94 100.0
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 3.7e-24 114.8 63 92.1
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 3.0e-18 95.1 55 83.6
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 3.9e-18 94.7 59 76.3
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 8.7e-18 93.6 61 73.8
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 2.5e-17 92.0 61 73.8
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 1.3e-16 89.7 61 72.1
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 1.3e-16 89.7 67 65.7
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 1.3e-16 89.7 67 65.7
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 2.2e-16 89.0 67 64.2
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 2.2e-16 89.0 61 65.6
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 2.8e-16 88.6 61 72.1
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.8e-16 88.6 69 63.8
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.8e-16 88.6 69 63.8
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 2.8e-16 88.6 59 72.9
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 3.7e-16 88.2 57 71.9
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 3.7e-16 88.2 65 66.2
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 4.8e-16 87.8 61 68.9
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.8e-16 87.8 61 68.9
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 4.8e-16 87.8 57 71.9
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.2e-16 87.0 61 67.2
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 8.2e-16 87.0 61 70.5
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 8.2e-16 87.0 61 68.9
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 1.1e-15 86.7 61 68.9
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 1.4e-15 86.3 61 67.2
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.4e-15 86.3 59 66.1
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 1.4e-15 86.3 59 66.1
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 1.4e-15 86.3 61 67.2
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.4e-15 86.3 57 71.9
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 1.8e-15 85.9 59 71.2
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.8e-15 85.9 65 63.1
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 1.8e-15 85.9 61 67.2
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 1.8e-15 85.9 61 67.2
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 1.8e-15 85.9 59 66.1
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 2.4e-15 85.5 61 65.6
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 2.4e-15 85.5 59 69.5
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 3.1e-15 85.1 61 65.6
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 3.1e-15 85.1 59 66.1
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 3.1e-15 85.1 61 65.6
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 3.1e-15 85.1 61 65.6
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 3.1e-15 85.1 57 70.2
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 4.1e-15 84.7 59 69.5
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 4.1e-15 84.7 59 64.4
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 4.1e-15 84.7 68 60.3
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 4.1e-15 84.7 68 60.3
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 4.1e-15 84.7 65 64.6
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 9.0e-15 83.6 59 66.1
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.2e-14 83.2 59 67.8
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 1.2e-14 83.2 61 62.3
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 1.2e-14 83.2 61 63.9
CSS0007999 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.5e-14 82.8 56 66.1
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.5e-14 82.8 61 65.6
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.5e-14 82.8 59 69.5
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.5e-14 82.8 59 69.5
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 3.4e-14 81.6 69 55.1
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 3.4e-14 81.6 61 62.3
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 3.4e-14 81.6 59 62.7
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 4.5e-14 81.3 61 62.3
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 5.9e-14 80.9 57 68.4
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 5.9e-14 80.9 59 67.8
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 5.9e-14 80.9 59 62.7
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 1.0e-13 80.1 57 64.9
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 1.0e-13 80.1 59 62.7
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 1.3e-13 79.7 59 62.7
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 1.3e-13 79.7 61 60.7
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 1.3e-13 79.7 67 53.7
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 2.2e-13 79.0 67 53.7
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 2.2e-13 79.0 67 53.7
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 2.2e-13 79.0 67 53.7
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 2.2e-13 79.0 61 59.0
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 2.2e-13 79.0 57 63.2
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 2.2e-13 79.0 57 63.2
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 2.2e-13 79.0 57 66.7
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 2.2e-13 79.0 52 69.2
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 2.9e-13 78.6 65 63.1
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 2.9e-13 78.6 61 62.3
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 2.9e-13 78.6 61 63.9
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 2.9e-13 78.6 61 63.9
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 3.8e-13 78.2 59 59.3
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 3.8e-13 78.2 59 66.1
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 3.8e-13 78.2 61 63.9
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 3.8e-13 78.2 59 62.7
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 63.2
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 5.0e-13 77.8 57 64.9
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 5.0e-13 77.8 61 62.3
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 5.0e-13 77.8 56 64.3
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 6.5e-13 77.4 58 65.5
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 6.5e-13 77.4 57 63.2
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 8.5e-13 77.0 52 71.2
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 8.5e-13 77.0 47 76.6
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 1.1e-12 76.6 57 61.4
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 1.1e-12 76.6 57 61.4
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.9e-12 75.9 64 60.9
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 1.9e-12 75.9 61 57.4
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 1.9e-12 75.9 61 54.1
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 2.5e-12 75.5 57 61.4
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 2.5e-12 75.5 61 57.4
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 2.5e-12 75.5 58 58.6
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 4.2e-12 74.7 58 60.3
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 7.2e-12 73.9 47 72.3
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 9.4e-12 73.6 59 59.3
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 1.6e-11 72.8 49 69.4
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 2.1e-11 72.4 58 60.3
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 2.7e-11 72.0 61 60.7
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 2.7e-11 72.0 61 55.7
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 4.6e-11 71.2 77 46.8
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 4.6e-11 71.2 58 58.6
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 4.6e-11 71.2 59 57.6
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 4.6e-11 71.2 59 57.6
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 6.1e-11 70.9 61 52.5
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 6.1e-11 70.9 52 61.5
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 7.9e-11 70.5 65 46.2
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 7.9e-11 70.5 49 69.4
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 7.9e-11 70.5 48 70.8
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 7.9e-11 70.5 59 55.9
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 7.9e-11 70.5 66 51.5
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 1.0e-10 70.1 71 56.3
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 1.8e-10 69.3 46 69.6
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 3.0e-10 68.6 65 49.2
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 8.8e-10 67.0 88 47.7
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 1.5e-09 66.2 59 50.8
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 2.5e-09 65.5 59 54.2
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 3.3e-09 65.1 61 55.7
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 3.3e-09 65.1 57 54.4
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 5.7e-09 64.3 66 54.5
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 7.4e-09 63.9 42 73.8
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 3.7e-08 61.6 43 67.4
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.2e-06 56.6 59 52.5
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 1.5e-06 56.2 71 47.9
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 2.0e-06 55.8 68 44.1
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 2.6e-06 55.5 56 48.2
Actinidia33091 Actinidia chinensis HOM05D003444 ORTHO05D003963 4.5e-06 54.7 47 53.2
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 5.9e-06 54.3 50 58.0
HanXRQChr01g0018841 Helianthus annuus HOM05D003444 ORTHO05D003963 7.7e-06 53.9 35 65.7


User provided reference genes

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