Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 7.2e-203 710.3 341 100.0
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 1.3e-114 417.2 319 63.3
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 2.1e-114 416.4 328 62.2
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 8.1e-114 414.5 334 59.3
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 3.4e-112 409.1 328 61.0
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 4.4e-112 408.7 314 62.1
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 3.8e-111 405.6 328 61.0
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 8.4e-111 404.4 328 60.7
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 3.2e-110 402.5 325 59.4
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 5.4e-110 401.7 327 60.9
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 9.3e-110 401.0 316 61.7
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 1.6e-109 400.2 331 58.6
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.7e-108 396.7 318 60.7
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 3.3e-107 392.5 327 58.4
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 4.3e-107 392.1 328 58.8
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 9.6e-107 391.0 331 60.4
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 3.6e-106 389.0 307 63.2
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 6.2e-106 388.3 335 58.8
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 1.4e-105 387.1 332 58.1
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 1.8e-105 386.7 327 57.8
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 2.4e-105 386.3 320 57.5
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 2.4e-105 386.3 340 59.1
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 4.5e-104 382.1 321 59.2
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 7.6e-104 381.3 326 58.6
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 2.9e-103 379.4 319 58.6
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 8.4e-103 377.9 338 57.1
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 1.4e-102 377.1 326 59.2
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.9e-102 376.7 317 58.4
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.4e-102 376.3 342 55.8
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 7.1e-102 374.8 326 58.9
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 4.6e-101 372.1 333 55.3
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.6e-101 372.1 342 55.0
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.0e-100 370.9 328 57.0
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.3e-100 370.5 315 57.1
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 3.0e-100 369.4 321 55.1
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 1.5e-99 367.1 334 56.0
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 5.6e-99 365.2 316 56.0
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 5.6e-99 365.2 320 57.2
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 7.4e-99 364.8 328 56.4
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.8e-98 362.8 314 56.4
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 3.7e-98 362.5 329 54.7
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 6.2e-98 361.7 316 55.1
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 8.1e-98 361.3 316 56.6
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.4e-97 360.5 321 55.1
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.1e-97 359.4 316 55.1
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 3.1e-97 359.4 317 56.5
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 4.0e-97 359.0 320 57.5
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 4.0e-97 359.0 322 56.8
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 5.3e-97 358.6 356 54.2
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 6.9e-97 358.2 315 56.5
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.2e-96 357.5 321 56.1
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.5e-96 357.1 328 55.5
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.6e-96 356.3 342 54.4
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 3.4e-96 355.9 317 54.9
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 4.5e-96 355.5 327 53.8
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 4.5e-96 355.5 320 54.1
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 1.0e-95 354.4 302 57.0
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 1.0e-95 354.4 302 57.0
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.3e-95 354.0 328 52.7
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.7e-95 353.6 316 56.3
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.7e-95 353.6 316 56.3
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 1.9e-94 350.1 316 56.0
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 3.2e-94 349.4 302 57.6
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 3.2e-94 349.4 265 63.4
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 5.5e-94 348.6 320 54.7
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 5.5e-94 348.6 307 57.3
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 2.7e-93 346.3 314 55.4
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 2.7e-93 346.3 314 55.4
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 3.5e-93 345.9 320 54.4
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 4.6e-93 345.5 331 51.1
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 4.6e-93 345.5 313 55.9
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.0e-92 342.8 343 51.0
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 5.1e-92 342.0 316 54.4
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 8.7e-92 341.3 312 54.8
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.5e-91 340.5 324 54.6
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 4.8e-90 335.5 329 54.1
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.1e-89 332.4 314 53.2
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 5.3e-89 332.0 290 56.2
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 5.3e-89 332.0 290 56.2
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 6.9e-89 331.6 308 54.5
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 7.2e-86 321.6 323 49.8
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 9.3e-86 321.2 275 58.9
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 1.2e-85 320.9 312 51.3
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 1.6e-85 320.5 282 56.7
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.1e-85 320.1 262 61.1
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 4.6e-85 318.9 302 52.3
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.1e-83 314.3 320 50.9
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.1e-83 314.3 306 49.7
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 4.1e-81 305.8 312 48.4
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 9.0e-81 304.7 314 48.7
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 2.0e-80 303.5 255 59.6
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 6.3e-74 282.0 317 49.5
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 2.6e-72 276.6 253 55.3
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 4.2e-70 269.2 299 47.2
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 5.3e-65 252.3 229 55.5
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 1.6e-64 250.8 253 52.2
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.1e-61 238.8 286 44.4
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 2.3e-60 236.9 311 41.8
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.0e-60 236.5 258 48.8
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 7.0e-57 225.3 328 43.0
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 3.2e-54 216.5 332 36.4
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.1e-45 187.2 176 51.1
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 6.1e-45 185.7 160 56.9
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 2.0e-43 180.6 266 39.8
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 2.8e-42 176.8 296 36.5
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 4.9e-42 176.0 135 61.5
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.6e-40 171.0 290 34.8
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 5.9e-40 169.1 127 60.6
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.4e-36 157.9 125 59.2
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.6e-32 142.9 138 50.7
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 1.9e-30 137.5 310 29.7
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 7.3e-30 135.6 134 54.5
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 7.3e-30 135.6 134 54.5
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 9.8e-27 125.2 383 25.3
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 5.6e-22 109.4 72 68.1
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 4.0e-20 103.2 106 53.8
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 2.0e-19 100.9 165 40.0
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.7e-18 96.7 119 46.2
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.3e-15 88.2 119 42.0
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 2.3e-15 87.4 78 55.1
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 5.6e-14 82.8 44 77.3
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 8.9e-12 75.5 130 40.0
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 2.0e-11 74.3 84 47.6
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 4.4e-11 73.2 154 38.3
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 5.8e-11 72.8 81 48.1
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.1e-09 68.6 44 65.9
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 1.3e-07 61.6 35 68.6
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 1.3e-07 61.6 47 46.8
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 8.6e-07 58.9 33 72.7
arahy.Tifrunner.gnm1.ann1.XBI7UF Arachis hypogaea HOM05D003444 ORTHO05D003963 2.5e-06 57.4 76 44.7


User provided reference genes

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