Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0001730 Simmondsia chinensis HOM05D007197 ORTHO05D009064 6.8e-125 450.7 228 100.0
AUR62041290 Chenopodium quinoa HOM05D007197 ORTHO05D009064 1.2e-73 280.4 221 64.7
AUR62034127 Chenopodium quinoa HOM05D007197 ORTHO05D009064 1.5e-71 273.5 218 63.8
EL10Ac7g15954 Beta vulgaris HOM05D007197 ORTHO05D009064 1.9e-66 256.5 241 57.3
Dinv32855 Davidia involucrata HOM05D007197 ORTHO05D009064 9.4e-66 254.2 221 59.3
Hma1.2p1_0846F.1_g227730 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 1.6e-65 253.4 208 62.0
Aqoxy4G03051 Aquilegia oxysepala HOM05D007197 ORTHO05D009064 2.7e-65 252.7 221 55.7
QL01p033595 Quercus lobata HOM05D007197 ORTHO05D009064 7.9e-65 251.1 214 58.9
Nn2g10506 Nelumbo nucifera HOM05D007197 ORTHO05D009064 5.1e-64 248.4 218 59.2
TAR636G0394 Trochodendron aralioides HOM05D007197 ORTHO05D009064 1.5e-63 246.9 224 58.5
Manes.11G135500 Manihot esculenta HOM05D007197 ORTHO05D009064 2.0e-63 246.5 218 57.3
CiPaw.13G100300 Carya illinoinensis HOM05D007197 ORTHO05D009064 5.7e-63 245.0 224 55.4
MBI14_g30584_MAGBIO Magnolia biondii HOM05D007197 ORTHO05D009064 7.4e-63 244.6 218 55.5
Cfa011437 Carpinus fangiana HOM05D007197 ORTHO05D009064 2.4e-61 239.6 209 58.9
Atru.chr7.1106 Acer truncatum HOM05D007197 ORTHO05D009064 3.1e-61 239.2 224 55.4
Oeu017383.1 Olea europaea HOM05D007197 ORTHO05D009064 5.3e-61 238.4 224 54.9
Eucgr.J02088 Eucalyptus grandis HOM05D007197 ORTHO05D009064 7.0e-61 238.0 225 53.3
Lalb_Chr19g0137651 Lupinus albus HOM05D007197 ORTHO05D009064 1.2e-60 237.3 212 55.7
Actinidia03776 Actinidia chinensis HOM05D007197 ORTHO05D009064 2.6e-60 236.1 225 56.9
Cc01_g12210 Coffea canephora HOM05D007197 ORTHO05D009064 2.6e-60 236.1 224 55.4
Sopen11g030850 Solanum pennellii HOM05D007197 ORTHO05D009064 3.5e-60 235.7 221 52.9
Thecc.09G328900 Theobroma cacao HOM05D007197 ORTHO05D009064 4.5e-60 235.3 208 58.2
MD11G1115100 Malus domestica HOM05D007197 ORTHO05D009064 5.9e-60 235.0 226 54.9
TWI79G0955 Tripterygium wilfordii HOM05D007197 ORTHO05D009064 7.7e-60 234.6 220 52.7
Nitab4.5_0000610g0220 Nicotiana tabacum HOM05D007197 ORTHO05D009064 1.0e-59 234.2 223 53.4
Lj3g0013433 Lotus japonicus HOM05D007197 ORTHO05D009064 1.3e-59 233.8 213 54.9
Medtr4g062540 Medicago truncatula HOM05D007197 ORTHO05D009064 1.3e-59 233.8 213 53.5
RcHm_v2.0_Chr5g0062661 Rosa chinensis HOM05D007197 ORTHO05D009064 1.3e-59 233.8 224 53.6
Solyc11g073220.3 Solanum lycopersicum HOM05D007197 ORTHO05D009064 1.3e-59 233.8 221 53.4
Haze_24013 Corylus avellana HOM05D007197 ORTHO05D009064 2.9e-59 232.6 257 49.4
Sed0002926 Sechium edule HOM05D007197 ORTHO05D009064 5.0e-59 231.9 218 56.4
CAN.G764.13 Capsicum annuum HOM05D007197 ORTHO05D009064 8.5e-59 231.1 224 51.8
Haze_24019 Corylus avellana HOM05D007197 ORTHO05D009064 1.1e-58 230.7 251 50.2
Duzib168G0795 Durio zibethinus HOM05D007197 ORTHO05D009064 1.1e-58 230.7 214 55.6
FAN11G2804 Fragaria x ananassa HOM05D007197 ORTHO05D009064 1.1e-58 230.7 224 52.7
Gohir.A05G098300 Gossypium hirsutum HOM05D007197 ORTHO05D009064 1.5e-58 230.3 224 53.1
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 5.5e-58 228.4 205 57.6
Nitab4.5_0003179g0070 Nicotiana tabacum HOM05D007197 ORTHO05D009064 1.6e-57 226.9 255 47.5
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 3.6e-57 225.7 208 57.7
TPR.G1052 Trifolium pratense HOM05D007197 ORTHO05D009064 8.0e-57 224.6 213 52.1
Gorai.009G102000 Gossypium raimondii HOM05D007197 ORTHO05D009064 1.0e-56 224.2 223 52.0
BcaB03g13374 Brassica carinata HOM05D007197 ORTHO05D009064 1.4e-56 223.8 217 55.3
AT1G07745 Arabidopsis thaliana HOM05D007197 ORTHO05D009064 3.9e-56 222.2 214 56.5
Prupe.6G086100 Prunus persica HOM05D007197 ORTHO05D009064 3.9e-56 222.2 224 50.0
Glyma.11G143900 Glycine max HOM05D007197 ORTHO05D009064 5.2e-56 221.9 208 51.9
Rhsim01G0224100 Rhododendron simsii HOM05D007197 ORTHO05D009064 5.2e-56 221.9 208 58.7
arahy.Tifrunner.gnm1.ann1.EBM8RS Arachis hypogaea HOM05D007197 ORTHO05D009064 6.7e-56 221.5 209 55.0
PSO206G0023 Papaver somniferum HOM05D007197 ORTHO05D009064 1.1e-55 220.7 220 54.5
VMungo1127G0131 Vigna mungo HOM05D007197 ORTHO05D009064 1.1e-55 220.7 213 53.5
Phvul.011G067900 Phaseolus vulgaris HOM05D007197 ORTHO05D009064 1.5e-55 220.3 212 53.3
arahy.Tifrunner.gnm1.ann1.RPJA1V Arachis hypogaea HOM05D007197 ORTHO05D009064 3.3e-55 219.2 209 54.5
FAN21G2562 Fragaria x ananassa HOM05D007197 ORTHO05D009064 5.7e-55 218.4 245 48.2
DCAR_018914 Daucus carota HOM05D007197 ORTHO05D009064 7.4e-55 218.0 217 52.1
AL1G17970 Arabidopsis lyrata HOM05D007197 ORTHO05D009064 9.7e-55 217.6 216 54.2
COL.COLO4_15236 Corchorus olitorius HOM05D007197 ORTHO05D009064 1.7e-54 216.9 227 52.0
Sp1g06430 Schrenkiella parvula HOM05D007197 ORTHO05D009064 3.7e-54 215.7 214 55.6
A08p35470 Brassica napus HOM05D007197 ORTHO05D009064 4.8e-54 215.3 217 53.5
BraA08t35453Z Brassica rapa HOM05D007197 ORTHO05D009064 4.8e-54 215.3 217 53.5
CsaV3_6G022120 Cucumis sativus L. HOM05D007197 ORTHO05D009064 1.4e-53 213.8 235 49.4
MELO3C013672.2 Cucumis melo HOM05D007197 ORTHO05D009064 3.1e-53 212.6 218 52.3
Carub.0001s0710 Capsella rubella HOM05D007197 ORTHO05D009064 4.1e-53 212.2 218 54.6
ATR0033G040 Amborella trichopoda HOM05D007197 ORTHO05D009064 5.3e-53 211.8 222 50.5
THA.LOC104800640 Tarenaya hassleriana HOM05D007197 ORTHO05D009064 1.2e-52 210.7 214 55.1
Lsat_1_v5_gn_5_166580 Lactuca sativa HOM05D001223 ORTHO05D001058 3.5e-52 209.1 219 52.1
CSS0011816 Camellia sinensis var. sinensis HOM05D007197 ORTHO05D009064 5.9e-52 208.4 219 52.5
ClCG02G020670 Citrullus lanatus HOM05D007197 ORTHO05D009064 5.9e-52 208.4 259 45.2
Ca_19199_v3 Cicer arietinum L. HOM05D007197 ORTHO05D009064 7.7e-52 208.0 185 56.2
C08p03340 Brassica napus HOM05D007197 ORTHO05D009064 1.3e-51 207.2 207 53.6
BolC8t47130H Brassica oleracea HOM05D007197 ORTHO05D009064 3.8e-51 205.7 213 52.1
ECA248G2344 Erigeron canadensis HOM05D007197 ORTHO05D009064 5.0e-51 205.3 218 52.3
Hund18943 Selenicereus undatus HOM05D007197 ORTHO05D009064 3.2e-50 202.6 157 66.9
Os09g0104200 Oryza sativa ssp. japonica HOM05D007197 ORTHO05D009064 4.2e-50 202.2 218 48.6
HanXRQChr11g0340311 Helianthus annuus HOM05D007197 ORTHO05D009064 5.5e-50 201.8 223 49.3
Peaxi162Scf00406g00019 Petunia axillaris HOM05D007197 ORTHO05D009064 2.0e-47 193.4 214 50.5
Thhalv10008243m.g Eutrema salsugineum HOM05D007197 ORTHO05D009064 1.4e-45 187.2 205 52.7
Zm00001eb329200 Zea mays HOM05D007197 ORTHO05D009064 5.4e-45 185.3 222 45.9
SHI05980 Sapria himalayana HOM05D000723 ORTHO05D001626 8.5e-43 177.9 212 48.6
Mapoly0014s0028 Marchantia polymorpha HOM05D007197 ORTHO05D009064 3.2e-42 176.0 219 42.9
Pp3c23_10930 Physcomitrium patens HOM05D007197 ORTHO05D009064 4.2e-42 175.6 212 47.2
AagrBONN_evm.TU.Sc2ySwM_228.390 Anthoceros agrestis HOM05D007197 ORTHO05D009064 3.6e-41 172.6 220 42.7
Prupe.6G066800 Prunus persica HOM05D007197 ORTHO05D009064 1.5e-39 167.2 180 51.1
vmacro14499 Vaccinium macrocarpon HOM05D007197 ORTHO05D009064 1.4e-37 160.6 272 38.6
SGA_v2.0_scaffold257G45723 Striga asiatica HOM05D007197 ORTHO05D009064 4.1e-37 159.1 159 54.1
Nn2g16043 Nelumbo nucifera HOM05D007197 ORTHO05D009064 1.2e-36 157.5 154 56.5
SMO358G0138 Selaginella moellendorffii HOM05D007197 ORTHO05D009064 6.6e-35 151.8 236 37.7
PSO339G6612 Papaver somniferum HOM05D007197 ORTHO05D009064 3.3e-34 149.4 164 52.4
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 9.5e-34 147.9 241 39.0
Hma1.2p1_0846F.1_g227720 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 4.7e-33 145.6 149 55.0
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 1.4e-32 144.1 99 66.7
Nn2g16045 Nelumbo nucifera HOM05D007197 ORTHO05D009064 4.1e-29 132.5 145 54.5
SMO142G0018 Selaginella moellendorffii HOM05D007197 ORTHO05D009064 1.2e-28 131.0 209 36.4
HPP92_017953 Vanilla planifolia HOM05D007197 ORTHO05D009064 2.7e-28 129.8 124 47.6
Gohir.D05G098400 Gossypium hirsutum HOM05D007197 ORTHO05D009064 1.5e-26 124.0 127 52.8
CARHR007550 Cardamine hirsuta HOM05D007197 ORTHO05D009064 1.6e-25 120.6 132 53.8
FvH4_3g34810 Fragaria vesca HOM05D007197 ORTHO05D009064 1.6e-25 120.6 135 51.1
HPP92_018064 Vanilla planifolia HOM05D007197 ORTHO05D009064 1.4e-24 117.5 173 38.2
Hma1.2p1_0056F.1_g031656 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 1.5e-23 114.0 130 50.8
COL.COLO4_29025 Corchorus olitorius HOM05D007197 ORTHO05D009064 4.9e-22 109.0 85 58.8
MCO16G347 Micromonas commoda HOM05D007197 ORTHO05D009064 2.4e-21 106.7 242 37.6
Cre03.g184651 Chlamydomonas reinhardtii HOM05D007197 ORTHO05D009064 4.7e-17 92.4 257 30.4
PRCOL_00004125 Prasinoderma coloniale HOM05D007197 ORTHO05D009064 7.5e-15 85.1 262 31.7
SEGI_26959 Sequoiadendron giganteum HOM05D007197 ORTHO05D009064 1.7e-14 84.0 78 50.0
unitig_0.g1024 Utricularia gibba HOM05D007197 ORTHO05D009064 1.6e-12 77.4 205 28.3
Cpa.g.sc252.16 Carica papaya HOM05D007197 ORTHO05D009064 1.7e-11 73.9 64 60.9
Psat7g220240 Pisum sativum HOM05D007197 ORTHO05D009064 5.6e-10 68.9 66 54.5
Hma1.2p1_3525F.1_g336560 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 7.3e-10 68.6 46 65.2
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 2.1e-09 67.0 215 27.4
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 4.7e-09 65.9 235 27.7
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 8.1e-09 65.1 218 28.4
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 1.1e-08 64.7 218 28.0
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 3.1e-08 63.2 218 28.0
HPP92_010750 Vanilla planifolia HOM05D001363 ORTHO05D006255 8.9e-08 61.6 214 27.6
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 5.8e-07 58.9 188 29.3
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 9.9e-07 58.2 226 27.0
EL10Ac9g22649 Beta vulgaris HOM05D001363 ORTHO05D006255 1.3e-06 57.8 241 25.7
SalBow1G6812 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.3e-06 57.8 249 26.9
MD11G1120900 Malus domestica HOM05D007288 ORTHO05D009200 1.7e-06 57.4 169 31.4
PRCOL_00002213 Prasinoderma coloniale HOM05D001363 ORTHO05D006255 2.2e-06 57.0 251 25.5
SGA_v2.0_scaffold146G36239 Striga asiatica HOM05D007288 ORTHO05D009200 2.9e-06 56.6 168 29.2
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 2.9e-06 56.6 217 27.6
Cre02.g102500 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D008648 4.9e-06 55.8 235 26.8
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 4.9e-06 55.8 182 29.1
MCO10G289 Micromonas commoda HOM05D007288 ORTHO05D009200 4.9e-06 55.8 169 29.6
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 6.4e-06 55.5 237 27.0
CDE02G0515 Ceratophyllum demersum HOM05D000045 ORTHO05D000611 6.4e-06 55.5 72 41.7
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 6.4e-06 55.5 215 27.0
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 6.4e-06 55.5 213 26.8
Oeu058505.2 Olea europaea HOM05D007288 ORTHO05D009200 6.4e-06 55.5 169 29.6
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 6.4e-06 55.5 223 26.0
SalBow3G2802 Salvia bowleyana HOM05D001363 ORTHO05D006255 6.4e-06 55.5 241 27.0
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 8.4e-06 55.1 244 27.0
Solyc11g072610.3 Solanum lycopersicum HOM05D007288 ORTHO05D009200 8.4e-06 55.1 171 28.7


User provided reference genes

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