Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 4.9e-257 890.6 434 100.0
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.3e-161 572.8 419 64.7
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 1.9e-160 569.7 426 63.8
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 8.1e-159 564.3 429 63.4
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 7.5e-157 557.8 429 61.1
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.1e-155 553.9 425 61.4
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.1e-155 553.9 429 60.8
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 5.4e-155 551.6 419 61.1
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 1.2e-154 550.4 421 62.5
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.0e-153 547.4 422 61.8
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-153 547.4 430 60.0
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 1.3e-153 547.0 422 62.1
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.3e-153 547.0 432 60.2
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.0e-153 545.8 432 59.7
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 1.1e-152 543.9 429 59.9
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.5e-152 543.5 428 60.0
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 5.6e-152 541.6 427 61.6
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.1e-151 539.7 412 62.1
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 1.1e-150 537.3 428 60.7
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.8e-150 536.6 412 61.7
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.4e-150 536.2 423 60.5
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 7.6e-149 531.2 413 60.0
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 8.4e-148 527.7 415 61.2
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 6.6e-145 518.1 414 60.1
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 4.8e-143 511.9 466 55.8
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 9.0e-142 507.7 433 57.7
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 2.0e-141 506.5 428 58.4
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 5.8e-141 505.0 428 57.5
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 2.2e-140 503.1 419 58.5
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 1.1e-139 500.7 420 57.6
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 6.0e-138 495.0 413 57.6
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 1.3e-137 493.8 428 56.1
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 5.1e-137 491.9 430 56.3
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 1.1e-136 490.7 428 56.3
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 1.9e-136 490.0 420 57.1
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.9e-136 490.0 426 56.8
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 2.5e-136 489.6 422 55.5
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 7.3e-136 488.0 426 57.0
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 1.3e-135 487.3 379 62.3
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.6e-135 486.9 433 55.7
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 2.8e-135 486.1 428 56.1
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 6.2e-135 485.0 418 57.4
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.1e-134 484.2 421 55.8
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.8e-134 483.4 426 55.2
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 3.1e-134 482.6 426 55.6
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 3.1e-134 482.6 425 55.1
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 5.3e-134 481.9 419 55.8
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 9.0e-134 481.1 438 55.5
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 1.2e-133 480.7 423 55.8
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.5e-133 480.3 423 55.3
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 5.8e-133 478.4 426 54.5
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 7.6e-133 478.0 445 53.9
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 1.7e-132 476.9 423 54.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 3.8e-132 475.7 418 55.5
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 2.4e-131 473.0 419 57.3
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 2.4e-131 473.0 419 54.9
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 4.2e-131 472.2 418 55.3
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 2.1e-130 469.9 370 61.4
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 4.6e-130 468.8 442 54.1
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 6.0e-130 468.4 419 54.4
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.8e-129 466.8 442 52.7
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 2.3e-129 466.5 419 53.9
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 3.0e-129 466.1 420 54.0
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 3.9e-129 465.7 459 51.6
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 2.4e-126 456.4 420 55.5
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 6.9e-126 454.9 430 54.2
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 5.8e-125 451.8 511 44.6
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 1.4e-123 447.2 432 53.7
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 6.0e-122 441.8 428 52.1
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.0e-121 441.0 314 64.6
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 1.9e-120 436.8 421 50.6
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 1.9e-120 436.8 430 52.8
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.8e-119 433.0 415 52.8
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.9e-118 428.3 310 63.9
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 2.9e-116 422.9 435 49.2
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 4.6e-114 415.6 409 51.6
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 5.1e-113 412.1 425 52.7
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.6e-111 407.1 426 47.9
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 1.4e-110 404.1 418 49.3
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 2.2e-108 396.7 312 61.5
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 2.9e-108 396.4 411 48.2
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 6.1e-106 388.7 384 51.6
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 8.8e-105 384.8 440 45.9
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 5.7e-104 382.1 420 48.1
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 2.0e-101 373.6 361 53.7
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 6.3e-95 352.1 409 45.0
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 6.3e-95 352.1 311 55.3
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.2e-87 327.0 457 43.3
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 4.8e-87 325.9 457 43.1
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.9e-83 313.9 256 60.5
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.2e-83 312.0 459 41.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.8e-81 307.4 457 41.6
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 5.2e-81 305.8 411 42.3
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 2.6e-80 303.5 411 42.1
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 7.5e-80 302.0 288 51.0
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 1.6e-77 294.3 429 42.4
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.8e-76 289.7 453 40.4
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 8.5e-76 288.5 294 50.0
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.5e-75 287.0 232 59.1
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.5e-69 266.5 415 41.4
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.5e-61 240.0 240 50.0
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 4.6e-61 239.6 241 50.6
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 1.2e-58 231.5 330 43.0
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 2.8e-58 230.3 203 58.1
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 4.4e-56 223.0 198 56.6
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.8e-53 212.2 160 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 1.0e-52 211.8 454 31.7
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 8.6e-52 208.8 190 53.2
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 9.5e-51 205.3 149 65.1
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.2e-47 194.1 150 60.0
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 6.0e-45 186.0 350 32.9
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 2.3e-44 184.1 224 46.0
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 3.0e-44 183.7 283 38.5
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 8.6e-44 182.2 407 27.8
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 6.2e-42 176.0 232 44.8
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.2e-42 176.0 232 44.8
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-36 158.7 135 55.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.6e-32 144.1 140 50.7
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 1.7e-28 131.3 361 28.5
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 1.1e-27 128.6 373 26.8
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 1.3e-26 125.2 110 53.6
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.4e-25 121.7 82 69.5
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.2e-24 118.6 136 44.1
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 4.4e-24 116.7 120 46.7
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.7e-23 114.8 104 51.9
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 1.4e-22 111.7 290 27.9
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.3e-20 104.4 111 49.5
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.4e-17 95.1 99 44.4
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 5.1e-12 76.6 88 45.5
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.3e-11 73.6 148 31.8
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 3.4e-08 63.9 87 44.8
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 1.0e-07 62.4 61 50.8
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-07 62.0 82 42.7
Atru.chr11.2520 Acer truncatum HOM05D002214 ORTHO05D007367 2.9e-07 60.8 41 68.3


User provided reference genes

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