Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 4.5e-200 701.0 352 100.0
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 3.2e-121 439.1 380 65.0
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 5.4e-121 438.3 374 66.0
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 9.2e-121 437.6 368 64.9
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 3.0e-119 432.6 373 64.1
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 4.3e-118 428.7 367 64.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.1e-117 426.4 367 63.5
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 8.1e-117 424.5 376 63.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.1e-116 422.5 388 60.8
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 4.0e-116 422.2 364 64.8
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 4.0e-116 422.2 288 75.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.2e-116 421.8 388 60.3
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.2e-115 420.6 300 72.7
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 2.6e-115 419.5 365 63.6
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 5.8e-115 418.3 288 75.0
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 9.9e-115 417.5 375 61.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 2.9e-114 416.0 387 59.2
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.9e-114 416.0 358 64.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 8.4e-114 414.5 375 64.0
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 5.4e-113 411.8 359 63.2
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.6e-112 410.2 290 71.4
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.6e-112 410.2 369 63.4
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.6e-112 410.2 368 63.3
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 2.1e-112 409.8 291 72.5
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.7e-112 409.5 366 62.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.5e-112 409.1 359 62.7
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 3.5e-112 409.1 355 63.9
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 7.8e-112 407.9 387 58.7
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.7e-111 406.8 361 63.2
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.9e-111 405.6 365 61.6
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.9e-111 405.6 364 60.7
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 5.1e-111 405.2 292 71.2
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.1e-110 404.1 267 76.8
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 2.5e-110 402.9 381 59.8
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.3e-110 402.5 295 69.2
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 4.3e-110 402.1 377 60.7
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 5.6e-110 401.7 366 59.8
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.3e-109 400.6 359 61.3
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.6e-109 400.2 385 58.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.6e-109 400.2 300 69.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.1e-109 399.8 314 65.3
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 4.8e-109 398.7 375 61.6
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 6.2e-109 398.3 368 59.0
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 8.1e-109 397.9 321 67.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.1e-108 397.5 293 70.0
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.4e-108 397.1 394 58.1
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.8e-108 396.7 352 63.1
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.4e-108 396.4 365 60.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.3e-108 395.2 268 74.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.2e-107 394.0 280 70.7
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.5e-107 393.7 362 60.2
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 5.8e-107 391.7 320 65.3
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 5.8e-107 391.7 382 57.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 7.6e-107 391.3 375 58.9
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.7e-106 390.2 268 74.3
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.9e-106 389.4 355 59.7
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 3.8e-106 389.0 361 59.8
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.9e-105 386.7 350 60.6
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 3.2e-105 386.0 356 58.7
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.2e-104 384.0 350 62.0
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 6.0e-104 381.7 360 57.5
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 3.0e-103 379.4 370 58.4
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.1e-103 378.6 461 50.1
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.5e-102 377.1 355 58.9
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.5e-102 377.1 356 59.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.9e-102 376.7 357 59.4
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.9e-102 376.7 282 69.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.3e-102 375.9 367 57.2
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 3.3e-102 375.9 350 61.7
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 5.6e-102 375.2 350 61.1
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 5.6e-102 375.2 351 62.1
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 7.4e-102 374.8 265 72.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.3e-101 374.0 350 59.1
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.8e-101 372.9 361 57.6
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.1e-101 371.3 361 59.6
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 8.1e-101 371.3 318 62.3
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.4e-100 370.5 357 59.1
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.4e-100 370.5 361 57.1
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.4e-100 370.5 361 57.3
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 5.3e-100 368.6 332 60.2
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 6.9e-100 368.2 376 55.9
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 5.8e-99 365.2 298 64.1
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 3.8e-98 362.5 330 60.0
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 3.0e-95 352.8 394 53.6
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.5e-94 350.5 285 61.8
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.1e-92 344.4 292 61.0
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.0e-90 337.8 380 53.4
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.3e-87 327.4 346 55.5
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 3.1e-84 316.2 277 57.4
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.3e-79 300.1 251 61.8
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 7.9e-72 275.0 241 60.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.8e-71 273.9 275 55.6
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.1e-70 271.2 237 56.5
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.0e-70 270.4 367 47.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 5.7e-70 268.9 240 54.2
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 3.7e-69 266.2 248 50.4
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 9.1e-68 261.5 278 55.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.1e-63 245.7 240 49.2
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 8.8e-63 245.0 190 65.3
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 4.4e-62 242.7 190 64.7
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.2e-61 240.4 238 49.2
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.1e-60 235.0 379 43.5
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 4.2e-57 226.1 206 58.7
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-56 224.6 194 58.2
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.8e-52 210.7 114 85.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.6e-48 197.6 236 40.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.4e-44 184.5 209 43.5
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.4e-44 183.7 120 75.8
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 7.0e-44 182.2 216 50.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 8.5e-42 175.3 202 44.1
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 3.4e-38 163.3 219 40.2
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 2.8e-32 143.7 214 45.3
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.2e-30 138.3 239 41.0
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 5.4e-28 129.4 137 56.9
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 7.8e-27 125.6 147 53.1
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 3.3e-25 120.2 127 57.5
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 4.7e-24 116.3 75 80.0
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-22 111.7 107 55.1
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 1.6e-16 91.3 216 30.1
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 1.8e-15 87.8 71 67.6
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.9e-12 77.8 105 41.9
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 2.5e-09 67.4 141 31.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 5.6e-09 66.2 149 30.2
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 1.2e-08 65.1 168 28.6
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 1.6e-08 64.7 160 30.6
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.6e-08 64.7 141 29.8
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 3.6e-08 63.5 159 29.6
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 3.6e-08 63.5 155 31.0
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 3.6e-08 63.5 141 30.5
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 4.7e-08 63.2 141 29.1
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 6.2e-08 62.8 182 27.5
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 6.2e-08 62.8 141 31.9
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 6.2e-08 62.8 141 31.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 6.2e-08 62.8 169 26.6
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 6.2e-08 62.8 141 29.8
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 6.2e-08 62.8 149 30.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 8.1e-08 62.4 141 29.1
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.1e-07 62.0 142 27.5
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.4e-07 61.6 140 30.7
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 2.3e-07 60.8 141 29.1
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 2.3e-07 60.8 141 29.1
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 3.1e-07 60.5 140 30.0
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 3.1e-07 60.5 140 30.7
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 3.1e-07 60.5 140 30.0
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.0e-07 60.1 150 31.3
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 4.0e-07 60.1 209 23.4
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 4.0e-07 60.1 141 28.4
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.2e-07 59.7 145 30.3
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 5.2e-07 59.7 142 31.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 5.2e-07 59.7 141 25.5
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 6.8e-07 59.3 150 27.3
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.2e-06 58.5 154 27.3
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.5e-06 58.2 151 29.8
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.5e-06 58.2 189 23.3
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.0e-06 57.8 140 29.3
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.6e-06 57.4 201 23.9
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.6e-06 57.4 140 28.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.6e-06 57.4 142 29.6
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 3.4e-06 57.0 150 30.0
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 4.4e-06 56.6 152 28.3
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.8e-06 56.2 140 28.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 7.6e-06 55.8 201 23.4
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 7.6e-06 55.8 201 23.4
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 7.6e-06 55.8 201 23.4
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 7.6e-06 55.8 147 25.2
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 9.9e-06 55.5 151 29.1
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 9.9e-06 55.5 157 29.3


User provided reference genes

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