Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.8e-192 676.0 421 100.0
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.1e-144 514.6 446 74.7
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 7.9e-143 511.1 422 80.1
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.8e-142 510.0 448 76.8
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.8e-140 502.7 439 73.8
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.4e-139 500.4 432 73.6
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.4e-139 500.4 421 72.2
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 5.3e-139 498.4 439 75.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.2e-138 497.3 428 75.9
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.5e-138 496.9 422 73.0
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 7.6e-138 494.6 437 74.6
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 9.9e-138 494.2 442 75.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.3e-137 493.8 459 70.6
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.4e-136 490.3 424 74.5
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.9e-136 490.0 420 69.3
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 2.4e-136 489.6 437 71.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 5.5e-136 488.4 438 75.6
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.2e-135 487.3 419 79.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.6e-135 486.9 456 71.5
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.7e-135 486.1 419 66.8
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.5e-135 485.7 420 79.3
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 4.6e-135 485.3 429 79.0
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 3.9e-134 482.3 447 70.2
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-133 480.3 425 77.9
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.3e-133 479.2 408 68.1
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.3e-133 479.2 434 74.0
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 5.6e-133 478.4 447 74.7
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 7.4e-133 478.0 445 74.6
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 7.4e-133 478.0 431 74.7
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 9.6e-133 477.6 412 74.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.6e-133 477.6 431 76.1
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 2.8e-132 476.1 446 75.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 3.7e-132 475.7 425 72.5
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 6.2e-132 474.9 450 71.8
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.1e-131 474.2 512 64.6
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.1e-131 474.2 416 73.3
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 2.4e-131 473.0 446 74.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.0e-131 472.2 395 79.0
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 4.0e-131 472.2 423 74.2
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 5.3e-131 471.9 423 74.7
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 5.3e-131 471.9 418 75.4
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-129 467.6 406 74.4
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 1.0e-129 467.6 440 75.9
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.3e-129 467.2 429 74.6
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.7e-129 466.8 414 77.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 3.8e-129 465.7 438 72.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.9e-128 463.4 479 68.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.2e-128 462.6 401 62.1
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 3.2e-128 462.6 421 63.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 4.2e-128 462.2 414 77.3
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 5.5e-128 461.8 439 71.1
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.2e-127 460.7 267 85.0
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 2.7e-127 459.5 429 72.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 7.9e-127 458.0 526 62.7
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.9e-125 453.4 438 65.3
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.5e-125 453.0 433 71.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 4.3e-125 452.2 437 70.0
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.7e-125 451.8 427 72.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 5.7e-125 451.8 441 70.5
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.4e-125 451.4 406 75.6
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 7.4e-125 451.4 423 73.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 9.7e-125 451.1 448 70.5
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.3e-124 450.7 451 69.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.8e-124 448.7 420 73.6
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.3e-124 448.4 420 73.8
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 8.2e-124 448.0 419 75.7
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 2.4e-123 446.4 413 59.8
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 9.0e-123 444.5 492 64.6
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 9.0e-123 444.5 422 69.9
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.5e-122 443.7 445 68.1
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.0e-122 443.4 442 69.5
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.6e-122 443.0 420 71.9
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.6e-122 443.0 430 73.0
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 4.5e-122 442.2 491 61.7
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.9e-122 441.8 260 84.2
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.0e-121 441.0 443 70.9
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.8e-121 439.1 424 66.7
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.4e-120 437.2 475 67.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.6e-119 433.7 253 83.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 2.3e-118 429.9 419 73.7
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.5e-117 426.4 432 72.2
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 5.7e-117 425.2 497 62.4
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 7.4e-117 424.9 423 61.9
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.3e-116 424.1 422 72.3
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.8e-116 422.9 423 65.2
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 8.2e-116 421.4 423 70.9
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.4e-115 420.6 431 57.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 4.1e-115 419.1 421 66.5
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 3.4e-114 416.0 422 66.6
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 3.2e-112 409.5 248 80.6
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 4.2e-112 409.1 424 67.9
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 5.5e-112 408.7 421 66.5
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 4.7e-111 405.6 421 66.3
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 6.1e-111 405.2 421 68.2
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 3.9e-110 402.5 423 63.1
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 9.7e-109 397.9 264 73.9
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.1e-107 392.5 241 75.1
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.1e-107 392.5 241 75.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.2e-106 391.0 242 76.9
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.6e-106 389.8 466 50.4
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.0e-105 385.6 237 78.9
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 6.5e-105 385.2 231 79.7
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.0e-102 377.9 390 72.3
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 8.2e-100 368.2 393 69.2
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 3.1e-99 366.3 269 69.1
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.1e-95 353.6 371 69.8
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.3e-84 317.8 154 90.9
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 6.3e-84 315.5 323 72.4
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.5e-80 303.5 213 70.4
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 2.8e-79 300.1 148 89.2
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.3e-72 275.4 136 88.2
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 8.0e-71 271.9 342 65.8
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 5.2e-70 269.2 324 71.3
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 2.4e-67 260.4 146 84.2
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 3.9e-65 253.1 259 52.9
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.3e-64 250.0 354 62.7
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 7.3e-64 248.8 347 62.8
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 1.2e-63 248.1 153 81.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 5.8e-61 239.2 174 69.5
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.4e-59 234.6 307 59.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.4e-59 233.8 204 53.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 5.4e-59 232.6 218 50.9
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 6.0e-58 229.2 314 63.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.3e-57 228.0 320 68.4
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 8.9e-54 215.3 114 85.1
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 3.3e-48 196.8 101 89.1
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.6e-47 194.5 96 89.6
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.0e-45 187.6 96 91.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.2e-44 184.1 409 48.2
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 3.2e-43 180.3 290 58.6
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 5.4e-43 179.5 98 83.7
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 7.8e-42 175.6 297 64.3
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-41 174.5 129 64.3
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 5.1e-41 172.9 96 84.4
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 3.3e-40 170.2 291 59.8
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 9.0e-38 162.2 84 86.9
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.9e-37 158.7 85 88.2
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 9.9e-37 158.7 83 85.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 3.2e-35 153.7 80 91.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.3e-33 148.3 80 88.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 3.3e-32 143.7 79 84.8
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.7e-28 131.3 243 65.0
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.2e-28 131.0 241 63.1
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.7e-26 124.0 83 74.7
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 6.0e-26 122.9 305 55.4
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.7e-25 119.0 273 59.3
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.3e-23 115.2 77 75.3
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 3.1e-22 110.5 74 70.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.9e-22 109.4 249 47.0
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 7.6e-21 105.9 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-20 105.1 68 70.6
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 3.7e-15 87.0 79 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.3e-12 78.6 68 64.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 4.9e-12 76.6 43 83.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.8e-09 68.2 57 61.4


User provided reference genes

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