Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.9e-102 374.8 186 100.0
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.0e-75 283.9 177 80.8
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.3e-54 216.1 187 63.1
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.2e-46 188.3 185 53.5
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.5e-40 168.3 159 56.0
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.7e-37 157.5 137 64.2
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.1e-35 152.5 143 61.5
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.7e-33 146.7 199 44.7
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.8e-20 102.8 138 45.7
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.9e-18 95.1 124 46.0
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.8e-18 94.7 125 40.8
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.0e-13 80.1 102 44.1
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.9e-12 76.3 90 42.2
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 6.4e-12 75.1 160 31.9
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.1e-11 72.4 81 46.9
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.8e-10 68.2 82 42.7
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.8e-10 68.2 125 30.4
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.0e-09 67.8 103 37.9
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.7e-09 67.0 75 44.0
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.3e-09 66.6 169 28.4
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.3e-09 66.6 82 40.2
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 3.9e-09 65.9 75 48.0
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.0e-09 65.5 95 36.8
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.5e-08 63.2 85 38.8
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 3.3e-08 62.8 79 38.0
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.3e-08 62.4 79 43.0
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 5.6e-08 62.0 104 41.3
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.6e-08 62.0 75 45.3
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 5.6e-08 62.0 73 46.6
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 9.5e-08 61.2 92 43.5
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.2e-07 60.8 88 36.4
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.6e-07 60.5 75 44.0
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.6e-07 59.3 88 44.3
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.6e-07 59.3 88 44.3
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 3.6e-07 59.3 88 42.0
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 3.6e-07 59.3 73 42.5
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 4.7e-07 58.9 88 43.2
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 4.7e-07 58.9 75 45.3
Hund04197 Selenicereus undatus HOM05D008449 ORTHO05D010615 4.7e-07 58.9 79 38.0
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 6.2e-07 58.5 75 44.0
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 8.0e-07 58.2 88 42.0
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 8.0e-07 58.2 88 39.8
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 8.0e-07 58.2 104 39.4
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.4e-06 57.4 88 39.8
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 38.6
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 40.9
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 40.9
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 39.8
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 40.9
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 40.9
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.8e-06 57.0 75 41.3
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 1.8e-06 57.0 88 43.2
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 2.3e-06 56.6 75 42.7
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 2.3e-06 56.6 104 39.4
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-06 56.6 88 42.0
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-06 56.6 88 42.0
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 2.3e-06 56.6 75 42.7
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 3.1e-06 56.2 88 42.0
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 3.1e-06 56.2 88 38.6
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 4.0e-06 55.8 104 38.5
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.0e-06 55.8 88 40.9
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 4.0e-06 55.8 88 40.9
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.0e-06 55.8 79 35.4
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 4.0e-06 55.8 77 41.6
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 5.2e-06 55.5 104 38.5
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 5.2e-06 55.5 104 39.4
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 5.2e-06 55.5 88 42.0
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 5.2e-06 55.5 88 42.0
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 5.2e-06 55.5 88 42.0
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 5.2e-06 55.5 88 40.9
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 5.2e-06 55.5 75 42.7
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 6.8e-06 55.1 109 36.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 6.8e-06 55.1 88 40.9
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 6.8e-06 55.1 104 38.5
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 6.8e-06 55.1 88 42.0
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 6.8e-06 55.1 88 42.0
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 6.8e-06 55.1 88 40.9
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 6.8e-06 55.1 75 44.0
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 6.8e-06 55.1 104 38.5
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 8.9e-06 54.7 104 37.5
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 8.9e-06 54.7 88 40.9
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 8.9e-06 54.7 104 36.5
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 8.9e-06 54.7 104 39.4


User provided reference genes

Program Settings