Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.1e-284 982.6 505 100.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 7.9e-198 694.1 504 69.6
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.7e-197 693.0 503 67.4
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 3.0e-197 692.2 498 68.3
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 1.5e-196 689.9 484 69.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 3.3e-196 688.7 535 65.2
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 9.6e-196 687.2 499 69.1
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.4e-194 683.3 484 70.9
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 4.0e-194 681.8 498 68.3
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 9.0e-194 680.6 524 65.5
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 3.8e-192 675.2 494 68.4
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 4.9e-192 674.9 485 69.7
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.4e-192 674.5 475 69.7
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 8.4e-192 674.1 473 71.5
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 4.2e-191 671.8 497 68.6
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 5.5e-191 671.4 475 70.3
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 9.3e-191 670.6 502 67.5
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.6e-190 669.8 483 69.2
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 6.0e-190 667.9 498 67.7
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-189 666.0 499 66.9
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 1.6e-187 659.8 500 66.4
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 2.8e-187 659.1 487 67.1
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 3.7e-187 658.7 481 68.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 6.2e-187 657.9 500 66.2
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.1e-186 657.1 478 69.9
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.4e-186 656.8 474 67.9
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.8e-186 656.4 504 65.9
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.8e-186 656.4 492 65.7
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 1.8e-186 656.4 484 67.8
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 2.4e-186 656.0 475 69.1
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 5.3e-186 654.8 494 66.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 5.3e-186 654.8 506 66.2
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.0e-185 652.9 494 66.2
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 4.5e-185 651.7 495 66.5
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 1.3e-184 650.2 475 69.1
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.2e-184 649.4 482 68.3
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.2e-184 649.4 476 68.9
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 2.5e-183 646.0 483 65.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.2e-183 645.6 482 67.6
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 4.2e-183 645.2 476 68.5
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.1e-182 642.9 483 65.0
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 2.7e-182 642.5 508 65.9
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 3.5e-182 642.1 483 65.4
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 7.9e-182 641.0 481 67.6
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 1.0e-181 640.6 474 65.8
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.0e-181 640.6 482 68.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.3e-181 640.2 483 65.0
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.8e-181 639.8 470 67.4
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-181 639.4 512 63.9
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 3.9e-181 638.6 470 67.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 3.9e-181 638.6 481 64.2
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 8.7e-181 637.5 456 69.7
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 8.7e-181 637.5 516 64.9
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 2.5e-180 636.0 470 68.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 4.3e-180 635.2 495 63.6
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 9.6e-180 634.0 472 68.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.3e-179 633.6 483 64.2
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 1.6e-179 633.3 481 66.1
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 1.6e-179 633.3 483 64.8
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.1e-179 632.9 503 62.8
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 2.8e-179 632.5 501 65.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 3.7e-179 632.1 475 68.2
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 6.3e-179 631.3 470 67.7
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 6.3e-179 631.3 474 66.5
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 8.2e-179 630.9 480 66.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.8e-178 629.8 502 64.3
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 4.1e-178 628.6 511 63.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 9.0e-178 627.5 494 64.4
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 9.0e-178 627.5 473 66.2
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 2.9e-176 622.5 497 63.4
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.4e-175 620.2 470 66.4
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 3.2e-175 619.0 499 63.5
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 3.2e-175 619.0 481 65.5
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 3.2e-175 619.0 470 66.2
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.7e-174 615.9 484 65.9
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 7.9e-174 614.4 478 66.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 5.7e-172 608.2 474 64.3
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 5.9e-169 598.2 474 65.4
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.2e-168 596.3 477 62.1
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 3.2e-167 592.4 476 65.5
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.7e-164 580.9 511 60.5
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-163 580.1 485 62.7
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.4e-162 576.2 482 62.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 2.0e-161 573.2 475 61.9
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 5.9e-161 571.6 480 61.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 3.8e-160 568.9 470 62.1
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.1e-159 567.4 470 62.3
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 2.6e-156 556.2 401 68.6
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-153 547.0 423 66.2
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.1e-148 530.8 414 65.2
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.2e-140 504.2 496 52.2
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-140 503.4 472 56.8
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.3e-139 498.4 476 56.5
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.7e-136 490.3 483 53.8
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.9e-131 472.2 483 52.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 2.6e-124 449.9 506 49.8
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.7e-115 420.6 503 48.1
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-113 414.5 499 47.9
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 4.3e-111 406.0 287 71.1
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-106 391.0 293 67.9
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.3e-99 367.9 365 55.6
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 9.6e-95 351.7 259 66.0
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 6.2e-94 349.0 256 70.3
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 9.3e-90 335.1 471 43.3
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.5e-89 333.2 293 60.1
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.1e-86 322.0 430 43.7
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 9.3e-82 308.5 385 42.9
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.0e-76 290.8 230 65.2
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.9e-65 252.3 518 35.7
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.1e-61 241.9 475 34.9
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.7e-56 222.6 168 65.5
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 2.9e-51 207.2 187 58.8
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.8e-40 169.1 255 42.4
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 5.9e-36 156.4 189 46.6
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 8.5e-35 152.5 481 29.1
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.2e-34 150.2 147 54.4
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 3.0e-32 144.1 226 42.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.0e-24 117.5 477 24.5
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 6.8e-24 116.3 114 55.3
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-21 108.6 451 26.4
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-21 108.2 472 26.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.4e-21 107.8 501 23.4
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-20 104.8 73 67.1
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-20 104.8 619 24.9
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 5.9e-20 103.2 494 24.7
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.9e-20 103.2 537 25.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.7e-20 102.8 75 65.3
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.7e-19 101.7 82 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.5e-18 98.6 640 24.8
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.2e-14 84.7 200 29.5
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-13 82.4 234 29.5
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.6e-12 78.6 108 39.8
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.5e-12 77.4 109 42.2
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 7.3e-10 69.7 521 23.0
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-09 68.6 45 68.9
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 3.6e-09 67.4 467 25.7
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.1e-09 66.6 230 27.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.2e-08 63.5 44 70.5
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 6.8e-08 63.2 43 67.4
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.4e-06 56.6 88 33.0


User provided reference genes

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