Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.0e-224 783.1 394 100.0
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.4e-172 608.2 324 92.9
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 7.5e-172 607.4 342 88.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.4e-170 601.3 323 91.6
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.4e-170 601.3 383 80.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.7e-169 599.0 327 89.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 4.6e-169 598.2 367 82.8
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.6e-169 598.2 325 90.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.9e-168 595.1 347 85.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.9e-168 595.1 352 84.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.6e-168 594.3 372 80.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 6.6e-168 594.3 334 88.6
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.1e-167 593.6 327 89.3
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.3e-167 592.0 359 82.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 9.5e-167 590.5 347 84.1
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.2e-166 590.1 347 84.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-166 590.1 342 86.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.6e-166 589.7 359 84.4
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.8e-166 589.0 323 89.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 4.7e-166 588.2 386 76.9
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.7e-166 588.2 358 82.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 8.1e-166 587.4 353 83.6
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.1e-165 587.0 357 82.4
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-165 587.0 374 77.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-165 586.6 374 79.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.4e-165 586.6 355 81.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.8e-165 586.3 327 87.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.3e-165 585.9 357 82.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.3e-165 585.9 388 79.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.1e-165 585.5 370 77.8
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 4.0e-165 585.1 355 81.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 5.2e-165 584.7 383 77.5
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.8e-165 584.3 329 86.3
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.2e-164 583.6 335 85.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.2e-164 583.6 335 85.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.4e-164 582.0 335 85.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.4e-164 581.6 355 80.6
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 7.6e-164 580.9 336 86.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 9.9e-164 580.5 339 85.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 9.9e-164 580.5 335 85.4
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.2e-163 579.3 352 83.5
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.2e-163 579.3 341 85.9
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.2e-163 579.3 355 80.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.8e-163 578.6 330 86.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.8e-163 578.6 342 83.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.8e-163 578.6 347 83.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 6.4e-163 577.8 367 79.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 6.4e-163 577.8 371 78.7
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.4e-163 577.8 365 79.5
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.4e-163 577.4 369 80.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.4e-162 576.6 387 77.0
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.9e-162 576.2 325 88.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.4e-162 575.9 371 78.4
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.2e-162 575.5 346 83.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 3.2e-162 575.5 325 86.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.1e-162 575.1 369 79.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.1e-162 575.1 369 78.6
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.4e-162 574.7 329 84.8
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.4e-162 574.7 346 83.2
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 5.4e-162 574.7 326 86.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 5.4e-162 574.7 351 82.9
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.4e-162 574.7 340 84.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.1e-162 574.3 366 79.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.1e-162 574.3 352 83.0
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.2e-162 573.9 338 84.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.2e-161 573.5 323 87.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-161 572.8 374 77.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-161 572.8 373 78.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.5e-161 572.0 361 80.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.6e-161 571.6 373 79.6
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.6e-161 571.6 327 85.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.6e-161 571.6 327 85.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.0e-160 570.5 344 81.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-160 569.3 346 82.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.6e-160 567.8 331 84.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.5e-159 566.6 331 84.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-159 566.2 347 81.8
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-159 566.2 379 76.3
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-159 566.2 379 76.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.5e-159 565.8 327 84.4
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.3e-159 565.5 332 84.6
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.3e-159 565.1 346 80.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 9.6e-159 563.9 341 82.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-158 563.5 355 80.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-158 562.8 323 84.8
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-158 562.8 341 82.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.1e-158 562.8 357 78.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.6e-158 562.0 341 82.7
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 4.7e-158 561.6 341 82.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.2e-158 561.2 352 80.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 8.1e-158 560.8 339 82.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.2e-156 557.0 328 83.5
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.5e-156 556.6 326 82.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 7.6e-156 554.3 331 82.2
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 9.9e-156 553.9 323 83.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 9.9e-156 553.9 331 82.8
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.2e-155 552.7 378 75.7
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 4.9e-155 551.6 331 81.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.7e-153 545.8 356 77.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.7e-153 545.8 377 75.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.5e-153 545.4 352 78.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.3e-152 543.5 399 71.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.1e-152 541.6 375 74.4
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 6.6e-152 541.2 354 76.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 9.6e-151 537.3 331 78.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.8e-150 535.8 329 82.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 2.8e-150 535.8 340 76.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.6e-150 535.4 364 73.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.9e-149 531.2 351 75.2
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.7e-147 526.6 358 72.3
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.7e-142 508.8 284 89.4
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 6.9e-141 504.6 374 70.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.6e-140 502.7 323 75.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.1e-138 497.3 309 79.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 4.2e-138 495.4 323 77.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-136 490.0 347 74.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.1e-133 480.7 325 75.4
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 5.3e-133 478.4 326 73.6
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.6e-132 476.1 332 75.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.3e-131 473.8 309 77.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.7e-131 473.4 272 85.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.9e-130 469.9 319 70.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-130 468.8 347 71.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-126 455.7 341 70.1
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.5e-124 448.7 331 73.1
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.9e-123 446.0 332 71.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 8.5e-123 444.5 237 91.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.5e-122 441.8 327 71.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.6e-121 439.1 237 89.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-120 437.6 348 66.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.3e-119 432.6 312 71.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-98 363.6 256 74.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.2e-89 334.3 202 80.2
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 4.4e-79 299.3 225 67.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.6e-73 279.6 331 43.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 7.8e-68 261.9 353 39.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.2e-62 243.8 325 41.2
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 5.6e-58 229.2 168 69.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.9e-54 216.9 291 47.8
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-47 193.0 148 69.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 4.4e-47 193.0 101 94.1
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 9.9e-47 191.8 165 63.0
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.2e-45 185.3 98 89.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 9.6e-42 175.3 100 88.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.7e-38 164.5 90 88.9
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 6.6e-35 152.5 76 90.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.2e-33 146.0 277 33.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.4e-32 144.1 93 80.6
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.2e-29 133.7 100 67.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.0e-27 128.6 74 85.1
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-26 124.8 100 64.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-23 114.8 64 85.9
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.9e-22 109.8 143 43.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.4e-16 90.9 72 65.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 4.2e-13 80.1 47 72.3
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 9.3e-13 79.0 44 77.3
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.9e-11 73.6 40 82.5
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 5.1e-11 73.2 97 49.5
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 4.1e-08 63.5 34 79.4
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 3.4e-07 60.5 34 76.5


User provided reference genes

Program Settings