Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 8.6e-120 433.7 227 100.0
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 8.6e-120 433.7 227 100.0
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 6.0e-97 357.8 227 80.6
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 1.7e-96 356.3 227 80.6
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 2.5e-95 352.4 227 78.0
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 3.1e-93 345.5 227 77.5
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 2.0e-92 342.8 227 77.1
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 3.4e-92 342.0 227 77.1
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 7.6e-92 340.9 227 75.8
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 3.8e-91 338.6 224 78.1
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 3.8e-91 338.6 227 75.3
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 1.9e-90 336.3 225 73.8
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 9.3e-90 334.0 227 74.9
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 1.6e-89 333.2 227 75.3
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 2.1e-89 332.8 227 73.1
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 2.7e-89 332.4 227 73.6
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 3.5e-89 332.0 227 73.6
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 3.5e-89 332.0 227 73.6
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 3.5e-89 332.0 237 72.2
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 6.0e-89 331.3 227 74.0
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 1.3e-88 330.1 227 72.2
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 3.9e-88 328.6 227 74.9
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 5.1e-88 328.2 227 72.2
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 8.7e-88 327.4 227 72.7
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 1.5e-87 326.6 227 74.4
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 2.5e-87 325.9 226 73.0
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 2.5e-87 325.9 218 76.1
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 2.5e-87 325.9 227 72.7
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 3.3e-87 325.5 227 72.2
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 4.3e-87 325.1 224 73.7
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 5.6e-87 324.7 225 71.6
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 9.6e-87 323.9 227 72.2
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 1.6e-86 323.2 227 71.8
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 2.8e-86 322.4 227 71.8
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 6.2e-86 321.2 227 72.2
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 1.8e-85 319.7 224 71.4
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 4.0e-85 318.5 227 70.9
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 4.0e-85 318.5 227 70.5
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 4.0e-85 318.5 267 64.0
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 9.0e-85 317.4 227 70.0
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.5e-84 316.6 220 71.4
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 2.0e-84 316.2 225 71.1
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.0e-84 316.2 242 68.2
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 3.4e-84 315.5 227 69.2
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 4.5e-84 315.1 225 72.0
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 4.5e-84 315.1 225 72.0
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 4.5e-84 315.1 225 72.0
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 4.5e-84 315.1 227 70.5
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 7.6e-84 314.3 227 70.5
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.3e-83 313.5 227 68.7
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 1.7e-83 313.2 250 65.2
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 2.2e-83 312.8 227 69.6
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 2.9e-83 312.4 210 76.7
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 6.4e-83 311.2 227 69.6
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 1.9e-82 309.7 224 70.5
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 2.4e-82 309.3 224 69.2
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 3.2e-82 308.9 227 67.0
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 5.4e-82 308.1 228 69.7
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 7.1e-82 307.8 227 67.0
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 9.3e-82 307.4 227 71.4
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 9.3e-82 307.4 225 69.8
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 1.2e-81 307.0 227 70.0
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 2.7e-81 305.8 228 68.9
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 3.5e-81 305.4 227 68.3
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 4.6e-81 305.1 227 66.1
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 7.9e-81 304.3 224 68.8
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 1.8e-80 303.1 227 66.5
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 1.8e-80 303.1 227 66.5
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.3e-80 302.8 220 69.1
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 3.9e-80 302.0 227 66.5
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 8.7e-80 300.8 227 66.1
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 8.7e-80 300.8 227 66.1
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 8.7e-80 300.8 227 66.1
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 1.1e-79 300.4 260 62.3
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.6e-79 298.1 234 66.2
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 1.6e-78 296.6 225 66.2
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 1.6e-78 296.6 224 66.1
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 2.1e-78 296.2 227 64.3
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 2.8e-78 295.8 227 67.0
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 4.8e-78 295.0 225 67.1
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 4.8e-78 295.0 227 65.2
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 1.4e-77 293.5 227 67.0
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 1.4e-77 293.5 205 71.7
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 2.4e-77 292.7 225 66.7
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 3.1e-77 292.4 210 68.6
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 1.0e-75 287.3 227 65.2
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 1.3e-75 287.0 224 64.7
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 2.2e-75 286.2 227 66.1
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 4.2e-74 282.0 194 72.2
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 4.6e-73 278.5 224 63.4
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 6.0e-73 278.1 227 62.6
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 6.0e-73 278.1 203 69.0
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 4.3e-71 271.9 242 60.7
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 2.4e-69 266.2 214 64.5
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 9.0e-69 264.2 195 70.3
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 5.8e-68 261.5 207 64.7
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 1.0e-64 250.8 221 57.5
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 1.3e-64 250.4 198 62.6
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 6.7e-64 248.1 223 59.2
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 1.1e-63 247.3 224 57.6
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 3.7e-62 242.3 193 64.2
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 4.8e-62 241.9 222 58.6
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 4.8e-62 241.9 222 58.6
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 1.8e-61 240.0 222 58.6
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 1.6e-57 226.9 208 55.3
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 5.3e-53 211.8 213 53.1
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 4.1e-45 185.7 180 58.3
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 1.9e-42 176.8 139 62.6
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 2.1e-41 173.3 200 46.5
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 4.7e-33 145.6 210 43.8
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 3.7e-30 136.0 91 68.1
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 2.2e-27 126.7 99 68.7
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 8.5e-27 124.8 160 48.1
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 2.0e-20 103.6 195 32.3
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 6.8e-16 88.6 218 29.4
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 3.0e-11 73.2 205 27.3
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 5.2e-08 62.4 106 42.5
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 5.8e-07 58.9 95 42.1
C05p10030 Brassica napus HOM05D006955 ORTHO05D008701 4.9e-06 55.8 35 74.3


User provided reference genes

Program Settings