Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 2008.8 1406 100.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.3e-302 1042.0 1226 58.2
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.9e-286 989.9 1197 53.4
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 7.1e-281 971.5 1252 54.3
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 2.0e-267 926.8 1236 51.8
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.2e-265 919.5 1188 52.0
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 6.7e-263 911.8 1211 52.2
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.9e-258 895.6 1180 54.5
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 2.3e-255 886.7 1210 49.8
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.2e-251 874.4 1238 52.3
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.2e-250 870.2 1194 52.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 2.7e-248 863.2 1199 50.4
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 1.0e-247 861.3 1319 48.6
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.0e-246 857.1 1246 50.2
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.8e-245 853.2 1235 52.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 8.2e-245 851.7 1186 52.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 8.5e-242 841.6 1229 50.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.2e-241 839.7 1233 50.5
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.5e-241 839.0 1182 48.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.1e-240 837.0 1181 51.7
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.8e-239 831.6 1202 50.4
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 7.4e-238 828.6 1182 49.3
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.7e-238 828.2 1181 51.1
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.8e-237 826.6 1228 51.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 3.1e-236 823.2 1183 48.6
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 4.1e-236 822.8 1215 52.1
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 4.1e-236 822.8 1222 50.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 4.1e-236 822.8 1189 51.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 7.0e-236 822.0 1195 52.6
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.5e-234 815.1 1185 49.2
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 4.2e-233 812.8 1227 48.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.2e-233 812.0 1187 50.0
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 7.2e-233 812.0 1185 51.1
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.8e-231 805.1 1206 50.2
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 8.8e-231 805.1 1150 51.4
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.6e-230 803.5 1248 51.0
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.4e-228 797.7 1194 47.5
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 7.0e-228 795.4 1190 47.1
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 5.9e-227 792.3 1245 49.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.2e-225 786.2 1212 46.9
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.4e-223 781.2 1250 48.6
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.0e-222 777.3 1204 48.4
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.4e-220 770.4 1253 49.2
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 5.9e-219 765.8 1225 47.8
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.7e-218 764.2 1276 45.0
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.9e-217 760.8 1253 46.4
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 9.4e-217 758.4 1270 45.2
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.1e-216 757.3 1249 46.0
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 6.1e-216 755.7 1243 48.9
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 8.8e-215 751.9 1291 45.8
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.2e-214 751.5 1243 47.0
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 4.4e-214 749.6 1174 48.6
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.3e-213 748.0 1240 49.2
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 2.2e-213 747.3 1221 48.7
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.4e-212 744.6 1255 43.6
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 2.4e-212 743.8 1240 50.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 7.0e-212 742.3 1221 48.1
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-209 734.6 717 60.5
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 7.5e-206 722.2 1205 45.1
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 9.2e-204 715.3 1227 44.7
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.7e-202 711.1 1225 45.2
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.1e-201 708.4 1186 47.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.8e-199 701.0 1285 45.7
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 8.9e-199 698.7 1214 44.2
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 9.8e-198 695.3 1162 48.3
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.9e-196 691.0 1208 43.5
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 8.9e-191 672.2 1213 43.4
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 6.4e-189 666.0 1182 46.4
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 6.4e-189 666.0 1192 47.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.9e-185 654.4 1205 47.0
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.5e-185 654.1 1190 45.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.2e-184 651.7 1219 45.3
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 3.1e-183 647.1 1207 43.1
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.9e-183 645.6 1014 46.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 4.9e-181 639.8 1173 43.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.2e-176 625.2 1210 43.0
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.7e-176 623.2 1205 44.6
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 5.2e-175 619.8 1192 48.6
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 7.6e-174 615.9 1290 43.3
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.4e-172 611.7 757 50.6
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.6e-171 606.7 1177 46.7
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.6e-171 606.7 1035 45.2
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 3.3e-169 600.5 1199 44.0
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 9.6e-169 599.0 1407 39.2
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.6e-168 598.2 1216 40.9
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 5.3e-167 593.2 1194 43.1
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 5.3e-167 593.2 1194 43.1
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-166 592.0 1205 41.4
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.9e-165 587.4 1206 41.4
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 7.1e-164 582.8 1198 43.6
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.4e-159 568.5 1159 43.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.1e-156 558.9 1209 40.7
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 3.5e-155 553.9 1190 44.0
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.8e-151 541.6 1204 39.3
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.2e-148 530.8 577 58.8
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 3.3e-145 520.8 1252 39.1
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.0e-134 485.0 760 46.8
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.2e-132 477.6 1202 40.8
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 3.0e-130 471.1 1213 32.3
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.7e-125 455.3 1109 36.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.1e-123 446.8 1207 35.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.2e-115 422.5 1214 37.9
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.5e-110 404.1 636 46.5
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-108 399.4 577 45.9
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-100 372.5 1031 37.4
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.1e-99 368.6 1211 35.6
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 6.8e-90 337.0 602 43.9
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 2.7e-70 271.9 627 38.9
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.9e-61 241.5 799 31.9
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.5e-60 238.8 646 35.9
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.6e-59 236.1 272 46.0
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.4e-58 232.3 475 43.2
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 5.2e-58 231.1 646 32.2
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.5e-44 186.4 180 53.9
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.9e-32 144.8 176 46.0
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 4.2e-31 141.7 292 53.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 6.0e-30 137.9 93 67.7
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.3e-27 130.2 533 32.5
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.1e-26 125.6 258 39.1
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.6e-25 122.5 231 45.5
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 2.9e-24 119.0 359 33.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.9e-20 106.3 102 50.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 3.1e-18 99.0 64 67.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-15 90.5 145 41.4
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.1e-15 90.5 239 37.2
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.5e-15 88.2 70 60.0
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.6e-14 86.7 59 64.4
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 3.6e-14 85.5 59 61.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 4.6e-14 85.1 307 25.1
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 4.3e-12 78.6 50 64.0
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.7e-11 76.6 50 64.0
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.2e-11 76.3 231 33.3
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 3.7e-11 75.5 55 60.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 9.1e-10 70.9 78 50.0
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 4.2e-07 62.0 57 49.1
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 4.2e-07 62.0 93 40.9
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 7.2e-07 61.2 74 50.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 3.6e-06 58.9 226 31.4
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 4.7e-06 58.5 40 60.0


User provided reference genes

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