Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 7.1e-50 200.3 101 100.0
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.4e-34 149.4 91 73.6
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 2.5e-34 148.7 91 76.9
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 4.2e-34 147.9 91 72.5
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.2e-34 147.9 91 75.8
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 5.5e-34 147.5 92 76.1
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.5e-34 147.5 91 74.7
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 7.2e-34 147.1 92 72.8
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.2e-33 146.4 91 75.8
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.2e-33 146.4 91 75.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.2e-33 146.4 91 75.8
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.2e-33 146.4 92 72.8
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 1.6e-33 146.0 92 76.1
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.6e-33 146.0 91 73.6
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 4.6e-33 144.4 91 73.6
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 1.0e-32 143.3 102 66.7
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.0e-32 143.3 92 75.0
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-32 142.9 93 74.2
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.3e-32 142.9 93 74.2
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.8e-32 142.5 92 75.0
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.3e-32 142.1 90 71.1
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.3e-32 142.1 97 71.1
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 3.0e-32 141.7 91 71.4
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 3.0e-32 141.7 96 65.6
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.9e-32 141.4 91 73.6
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 6.7e-32 140.6 97 68.0
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 6.7e-32 140.6 95 70.5
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 6.7e-32 140.6 95 70.5
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 6.7e-32 140.6 93 72.0
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 6.7e-32 140.6 86 77.9
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 8.7e-32 140.2 95 69.5
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 8.7e-32 140.2 95 69.5
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 8.7e-32 140.2 95 69.5
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 8.7e-32 140.2 92 72.8
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 8.7e-32 140.2 93 71.0
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.5e-31 139.4 94 72.3
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.5e-31 139.4 92 70.7
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-31 138.7 93 69.9
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-31 138.7 93 69.9
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 2.5e-31 138.7 93 72.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 3.3e-31 138.3 93 73.1
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.3e-31 138.3 92 69.6
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 3.3e-31 138.3 93 73.1
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 4.3e-31 137.9 92 66.3
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.3e-31 137.9 91 72.5
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 5.7e-31 137.5 92 69.6
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 5.7e-31 137.5 93 67.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 5.7e-31 137.5 93 69.9
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.7e-31 137.5 91 68.1
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.7e-31 137.5 91 68.1
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.7e-31 137.5 90 72.2
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 7.4e-31 137.1 88 69.3
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 7.4e-31 137.1 95 69.5
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 7.4e-31 137.1 92 73.9
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 9.7e-31 136.7 93 75.3
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 9.7e-31 136.7 92 71.7
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 9.7e-31 136.7 92 67.4
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 9.7e-31 136.7 92 67.4
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.3e-30 136.3 93 67.7
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.3e-30 136.3 93 69.9
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.6e-30 136.0 94 68.1
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.6e-30 136.0 93 66.7
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.6e-30 136.0 91 64.8
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 2.2e-30 135.6 92 70.7
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.8e-30 135.2 92 70.7
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 2.8e-30 135.2 92 65.2
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.7e-30 134.8 93 66.7
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.7e-30 134.8 93 68.8
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 3.7e-30 134.8 92 70.7
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 4.8e-30 134.4 92 66.3
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 4.8e-30 134.4 93 65.6
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 4.8e-30 134.4 94 68.1
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 6.3e-30 134.0 93 66.7
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 6.3e-30 134.0 91 68.1
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.3e-30 134.0 91 63.7
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 8.2e-30 133.7 93 72.0
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.1e-29 133.3 95 68.4
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.1e-29 133.3 92 69.6
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.1e-29 133.3 91 67.0
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.1e-29 133.3 93 68.8
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.1e-29 133.3 94 66.0
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.4e-29 132.9 87 70.1
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.4e-29 132.1 91 67.0
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 2.4e-29 132.1 91 67.0
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.4e-29 132.1 91 67.0
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.4e-29 132.1 92 66.3
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 4.1e-29 131.3 93 66.7
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 4.1e-29 131.3 92 67.4
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 4.1e-29 131.3 93 65.6
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 4.1e-29 131.3 93 66.7
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.1e-29 131.3 91 61.5
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 4.1e-29 131.3 99 64.6
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 5.3e-29 131.0 92 65.2
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 5.3e-29 131.0 91 63.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.3e-29 131.0 90 68.9
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 5.3e-29 131.0 102 62.7
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 6.9e-29 130.6 97 66.0
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 6.9e-29 130.6 92 68.5
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 6.9e-29 130.6 91 68.1
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.5e-28 129.4 91 65.9
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 1.5e-28 129.4 98 62.2
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.5e-28 129.4 91 65.9
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.0e-28 129.0 91 64.8
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.0e-28 129.0 92 67.4
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.0e-28 129.0 92 66.3
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 2.0e-28 129.0 93 64.5
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 2.6e-28 128.6 91 65.9
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.6e-28 128.6 93 65.6
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 2.6e-28 128.6 95 66.3
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.4e-28 128.3 79 68.4
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 4.5e-28 127.9 94 62.8
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 7.7e-28 127.1 91 68.1
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 7.7e-28 127.1 93 60.2
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.7e-28 127.1 93 64.5
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 7.7e-28 127.1 90 66.7
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.0e-27 126.7 90 66.7
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.0e-27 126.7 90 65.6
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.3e-27 126.3 94 62.8
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.0e-27 124.4 91 61.5
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.0e-27 124.4 91 63.7
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 5.0e-27 124.4 93 63.4
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 6.5e-27 124.0 80 70.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.1e-26 123.2 92 62.0
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.2e-26 121.7 91 63.7
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 3.2e-26 121.7 91 61.5
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.2e-26 121.7 93 61.3
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.2e-26 121.3 79 68.4
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.5e-26 120.9 91 63.7
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 7.2e-26 120.6 92 62.0
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 7.2e-26 120.6 92 63.0
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 7.2e-26 120.6 96 60.4
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.1e-25 119.0 97 59.8
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 3.6e-25 118.2 91 60.4
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 4.6e-25 117.9 91 60.4
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 6.1e-25 117.5 93 59.1
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.1e-25 117.5 93 60.2
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 7.9e-25 117.1 91 60.4
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 1.4e-24 116.3 91 59.3
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.8e-24 115.9 92 57.6
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 3.9e-24 114.8 92 57.6
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 1.1e-23 113.2 92 58.7
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 1.1e-23 113.2 91 58.2
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 1.1e-23 113.2 91 58.2
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.1e-23 113.2 85 57.6
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 1.1e-23 113.2 81 66.7
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.5e-23 112.8 91 56.0
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 2.0e-23 112.5 92 55.4
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 2.0e-23 112.5 84 63.1
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 1.3e-22 109.8 80 65.0
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.7e-22 108.2 91 56.0
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 8.2e-22 107.1 83 62.7
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 8.2e-22 107.1 108 51.9
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.8e-21 105.9 72 66.7
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 4.1e-21 104.8 78 57.7
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 6.9e-21 104.0 79 63.3
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 5.9e-20 100.9 81 59.3
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.3e-19 99.8 92 51.1
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.2e-17 93.2 64 67.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.1e-17 92.4 74 52.7
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 3.6e-17 91.7 90 44.4
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 9.7e-15 83.6 72 55.6
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.2e-14 82.4 61 57.4
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.8e-14 81.3 66 54.5
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 6.3e-14 80.9 73 50.7
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.1e-13 78.2 51 72.5
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 4.1e-13 78.2 51 72.5
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 9.1e-13 77.0 73 43.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 7.7e-12 73.9 98 39.8
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.3e-11 73.2 71 43.7
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 3.8e-11 71.6 40 75.0
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.3e-08 62.4 69 43.5
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 1.5e-07 59.7 78 35.9
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.3e-06 56.6 69 30.4


User provided reference genes

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