Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.5e-136 488.8 249 100.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.6e-89 330.9 229 75.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.1e-88 330.5 229 75.1
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.3e-88 328.6 229 74.7
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 7.3e-88 327.8 229 74.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 9.5e-88 327.4 233 73.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-86 323.9 229 73.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.4e-85 318.9 213 75.6
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.8e-85 318.2 231 70.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.9e-85 317.4 234 69.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 9.9e-85 317.4 230 70.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 9.9e-85 317.4 212 74.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-84 317.0 230 71.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.7e-84 316.6 232 70.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.9e-84 315.8 225 73.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 6.4e-84 314.7 229 71.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.3e-84 314.3 214 76.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.1e-83 313.9 229 72.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-83 313.9 231 70.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-83 313.9 232 70.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.1e-83 313.9 232 71.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-83 313.5 219 73.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.4e-83 313.5 230 70.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.9e-83 313.2 214 73.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.9e-83 313.2 230 70.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.4e-83 312.8 230 70.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.4e-83 312.8 228 71.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.2e-83 312.4 228 70.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.1e-83 312.0 228 69.3
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.1e-83 312.0 228 71.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.1e-83 312.0 234 68.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.1e-83 312.0 230 70.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.1e-83 312.0 217 72.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 4.1e-83 312.0 230 69.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.4e-83 311.6 216 74.1
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.4e-83 311.6 230 70.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.4e-83 311.6 230 70.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 5.4e-83 311.6 230 70.9
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.4e-83 311.6 217 71.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.4e-83 311.6 229 70.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.1e-83 311.2 226 70.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.1e-83 311.2 233 67.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 7.1e-83 311.2 230 69.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 7.1e-83 311.2 228 70.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.2e-83 310.8 230 68.3
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.2e-82 310.5 235 68.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.1e-82 309.7 214 74.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.1e-82 309.7 214 73.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-82 309.7 217 73.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-82 309.3 238 66.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.7e-82 309.3 233 69.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.5e-82 308.9 226 69.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.5e-82 308.9 220 68.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.0e-82 308.1 214 75.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 7.8e-82 307.8 207 75.4
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.8e-82 307.8 229 70.3
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.8e-82 307.8 222 71.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 7.8e-82 307.8 216 73.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-81 307.4 220 70.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.3e-81 307.0 236 67.8
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-81 306.6 223 71.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-81 306.6 231 70.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-81 306.2 230 70.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.3e-81 306.2 229 69.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-81 305.4 216 74.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.1e-81 305.1 227 67.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 5.1e-81 305.1 215 73.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.1e-81 305.1 219 73.1
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.6e-81 304.7 233 67.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.6e-81 304.3 225 69.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.5e-80 303.5 223 70.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.9e-80 303.1 206 74.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.9e-80 303.1 216 71.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-80 303.1 225 69.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.5e-80 302.8 233 67.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.3e-80 302.4 236 65.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.3e-80 302.4 227 68.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.3e-80 302.4 247 64.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 9.5e-80 300.8 230 67.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.1e-79 299.7 220 69.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.1e-79 299.7 245 64.1
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-79 299.7 234 65.4
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-79 299.7 236 65.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.8e-79 299.3 232 66.4
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.8e-79 299.3 231 68.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.6e-79 298.9 250 64.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.7e-79 298.5 232 66.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.2e-79 298.1 209 73.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.1e-78 297.4 207 71.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-78 297.4 215 71.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.4e-78 297.0 220 68.6
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.4e-78 297.0 215 71.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.8e-78 296.6 209 72.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.8e-78 296.6 209 73.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.4e-78 296.2 232 65.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.4e-78 296.2 228 68.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.4e-78 296.2 237 65.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.2e-78 295.0 235 65.1
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 5.2e-78 295.0 235 65.1
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.2e-78 295.0 237 65.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 5.2e-78 295.0 237 65.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 8.9e-78 294.3 207 70.5
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.8e-77 291.6 251 64.5
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.7e-76 290.0 227 67.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.9e-76 289.3 233 66.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.8e-76 288.9 206 70.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.9e-76 288.5 234 65.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.4e-76 288.1 190 78.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.4e-76 288.1 236 64.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.4e-76 287.7 206 71.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.4e-76 287.7 226 67.3
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-75 287.0 191 77.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.9e-75 286.6 235 64.3
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.4e-75 285.0 243 61.3
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.2e-75 284.3 259 59.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-74 283.9 258 60.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-74 283.9 221 67.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.2e-74 283.9 258 60.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.6e-74 283.5 207 71.5
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.0e-74 281.6 206 70.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.8e-74 281.2 213 70.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.0e-73 280.8 242 64.5
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.3e-73 280.4 232 62.9
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.7e-73 280.0 230 63.5
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.9e-73 278.9 227 65.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.9e-73 278.9 226 66.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.5e-72 276.9 266 58.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.2e-71 273.9 225 62.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.6e-69 266.2 282 54.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.9e-68 262.7 186 74.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.2e-67 259.2 229 62.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 5.1e-65 251.9 177 71.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 8.7e-65 251.1 228 61.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.0e-62 242.3 174 68.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-58 230.3 161 72.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.3e-57 227.3 230 52.6
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.6e-55 220.3 147 75.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 4.8e-55 218.8 239 51.9
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.1e-54 216.1 147 74.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 6.4e-52 208.4 162 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.4e-51 207.2 286 44.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.5e-48 196.4 227 46.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.1e-47 193.4 179 55.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.2e-43 179.1 143 63.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-39 167.5 107 76.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.8e-39 166.4 108 79.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-39 165.6 108 79.6
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 5.3e-38 162.2 115 72.2
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.2e-31 140.2 187 47.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.4e-30 137.5 85 83.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.2e-27 126.3 132 50.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 6.5e-20 102.1 71 73.2
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.1e-19 101.3 244 34.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.2e-19 99.4 226 35.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.2e-17 92.4 185 34.6
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.7e-15 87.4 85 54.1
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-14 83.2 57 71.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.0e-14 82.0 69 59.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-10 70.9 44 81.8
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-09 67.8 53 67.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 6.7e-09 65.5 115 38.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.8e-09 65.1 45 75.6


User provided reference genes

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