Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005290 Simmondsia chinensis HOM05D000021 ORTHO05D014459 8.9e-60 233.4 119 100.0
Hund05754 Selenicereus undatus HOM05D000021 ORTHO05D000010 5.7e-22 107.8 99 55.6
AUR62030252 Chenopodium quinoa HOM05D000021 ORTHO05D000010 6.3e-21 104.4 92 54.3
AUR62027590 Chenopodium quinoa HOM05D000021 ORTHO05D000010 2.0e-19 99.4 110 49.1
AUR62030251 Chenopodium quinoa HOM05D000021 ORTHO05D000010 2.6e-19 99.0 110 49.1
QL05p059338 Quercus lobata HOM05D000021 ORTHO05D000010 2.6e-19 99.0 97 50.5
Manes.17G067050 Manihot esculenta HOM05D000021 ORTHO05D000010 4.5e-19 98.2 100 49.0
CSS0022040 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.9e-19 97.8 101 49.5
CSS0034522 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.9e-19 97.8 101 49.5
CSS0049452 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-18 96.3 103 47.6
Glyma.08G083300 Glycine max HOM05D000021 ORTHO05D000010 1.7e-18 96.3 94 50.0
Prupe.4G076500 Prunus persica HOM05D000021 ORTHO05D000010 1.7e-18 96.3 98 46.9
Rhsim13G0192600 Rhododendron simsii HOM05D000021 ORTHO05D000010 2.2e-18 95.9 101 52.5
CiPaw.10G093700 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.9e-18 95.5 99 49.5
Dinv30711 Davidia involucrata HOM05D000021 ORTHO05D000010 2.9e-18 95.5 97 50.5
Thecc.06G154600 Theobroma cacao HOM05D000021 ORTHO05D000010 3.8e-18 95.1 108 44.4
Phvul.002G196200 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 6.5e-18 94.4 94 47.9
EL10Ac8g19758 Beta vulgaris HOM05D000021 ORTHO05D000010 8.5e-18 94.0 98 50.0
Lj2A974T33 Lonicera japonica HOM05D000021 ORTHO05D000010 8.5e-18 94.0 96 51.0
Glyma.05G128200 Glycine max HOM05D000021 ORTHO05D000010 2.5e-17 92.4 94 47.9
Lj1A1184G79 Lonicera japonica HOM05D000021 ORTHO05D000010 2.5e-17 92.4 107 46.7
Rhsim13G0192900 Rhododendron simsii HOM05D000021 ORTHO05D000010 2.5e-17 92.4 101 48.5
VMungo0251G1024 Vigna mungo HOM05D000021 ORTHO05D000010 2.5e-17 92.4 94 45.7
MD05G1289000 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-17 92.0 97 46.4
Actinidia16728 Actinidia chinensis HOM05D000021 ORTHO05D000010 5.5e-17 91.3 97 49.5
CAN.G257.8 Capsicum annuum HOM05D000021 ORTHO05D000010 5.5e-17 91.3 104 49.0
FAN21G2940 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.4e-17 90.5 96 46.9
RcHm_v2.0_Chr5g0013311 Rosa chinensis HOM05D000021 ORTHO05D000010 9.4e-17 90.5 96 47.9
CANSAT35G1256 Cannabis sativa HOM05D000021 ORTHO05D000010 1.2e-16 90.1 94 46.8
Solyc02g070890.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.6e-16 89.7 96 50.0
PGSC0003DMG400008296 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.6e-16 89.7 96 50.0
Sopen02g019970 Solanum pennellii HOM05D000021 ORTHO05D000010 2.1e-16 89.4 96 49.0
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.7e-16 89.0 93 44.1
COL.COLO4_06067 Corchorus olitorius HOM05D000021 ORTHO05D000010 3.6e-16 88.6 98 45.9
Duzib235G1536 Durio zibethinus HOM05D000021 ORTHO05D000010 3.6e-16 88.6 98 44.9
Lj4g0015843 Lotus japonicus HOM05D000021 ORTHO05D000010 3.6e-16 88.6 95 48.4
TAR629G1561 Trochodendron aralioides HOM05D000021 ORTHO05D000010 3.6e-16 88.6 97 47.4
TAR629G1831 Trochodendron aralioides HOM05D000021 ORTHO05D000010 3.6e-16 88.6 97 47.4
FvH4_3g06100 Fragaria vesca HOM05D000021 ORTHO05D000010 4.6e-16 88.2 96 46.9
FAN11G3800 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.6e-16 88.2 96 46.9
CsaV3_6G051540 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.1e-16 87.8 96 49.0
Sed0021693 Sechium edule HOM05D000021 ORTHO05D000010 6.1e-16 87.8 96 47.9
HanXRQChr10g0298871 Helianthus annuus HOM05D000021 ORTHO05D000010 7.9e-16 87.4 97 44.3
Nitab4.5_0006300g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.0e-15 87.0 96 47.9
Ciclev10024610m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.8e-15 86.3 109 44.0
TWI73G0016 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.3e-15 85.9 94 47.9
CAN.G257.10 Capsicum annuum HOM05D000021 ORTHO05D000010 3.0e-15 85.5 104 45.2
Manes.17G067300 Manihot esculenta HOM05D000021 ORTHO05D000010 3.0e-15 85.5 95 47.4
Gohir.D06G141700 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.1e-15 84.7 94 46.8
Gorai.010G165300 Gossypium raimondii HOM05D000021 ORTHO05D000010 5.1e-15 84.7 94 46.8
Nitab4.5_0029367g0020 Nicotiana tabacum HOM05D000021 ORTHO05D000010 6.7e-15 84.3 96 47.9
HanXRQChr10g0298801 Helianthus annuus HOM05D000021 ORTHO05D000010 8.8e-15 84.0 97 41.2
Ciclev10018646m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.1e-14 83.6 98 46.9
DCAR_003938 Daucus carota HOM05D000021 ORTHO05D000010 1.1e-14 83.6 96 45.8
PSO229G0014 Papaver somniferum HOM05D000021 ORTHO05D000010 1.1e-14 83.6 97 47.4
ClCG01G024390 Citrullus lanatus HOM05D000021 ORTHO05D000010 1.5e-14 83.2 96 44.8
DCAR_007900 Daucus carota HOM05D000021 ORTHO05D000010 1.5e-14 83.2 96 45.8
PSO675G6695 Papaver somniferum HOM05D000007 ORTHO05D000017 2.0e-14 82.8 97 46.4
Gohir.A06G136500 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.5e-14 82.4 94 45.7
Haze_05541 Corylus avellana HOM05D000021 ORTHO05D000010 3.3e-14 82.0 93 47.3
MBI02_g39614_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 3.3e-14 82.0 99 46.5
Solyc02g070910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 3.3e-14 82.0 105 43.8
Sopen02g019990 Solanum pennellii HOM05D000021 ORTHO05D000010 3.3e-14 82.0 105 43.8
Lsat_1_v5_gn_7_32741 Lactuca sativa HOM05D000021 ORTHO05D000010 4.3e-14 81.6 97 46.4
ECA236G1254 Erigeron canadensis HOM05D000021 ORTHO05D000010 7.4e-14 80.9 110 41.8
Eucgr.D00318 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.4e-14 80.9 97 39.2
arahy.Tifrunner.gnm1.ann1.WQJ971 Arachis hypogaea HOM05D000021 ORTHO05D000010 9.7e-14 80.5 95 43.2
Lsat_1_v5_gn_7_32801 Lactuca sativa HOM05D000021 ORTHO05D000010 9.7e-14 80.5 98 45.9
HanXRQChr10g0298851 Helianthus annuus HOM05D000021 ORTHO05D000010 1.3e-13 80.1 97 41.2
Lalb_Chr07g0188821 Lupinus albus HOM05D000021 ORTHO05D000010 1.3e-13 80.1 94 41.5
Ca_18276_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 1.7e-13 79.7 94 44.7
Potri.004G065400 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.7e-13 79.7 97 40.2
MELO3C007152.2 Cucumis melo HOM05D012760 ORTHO05D014459 2.2e-13 79.3 96 45.8
HanXRQChr04g0117751 Helianthus annuus HOM05D000021 ORTHO05D000010 2.2e-13 79.3 97 40.2
HanXRQChr10g0298811 Helianthus annuus HOM05D000021 ORTHO05D000010 3.7e-13 78.6 97 41.2
PSO017G4089 Papaver somniferum HOM05D000021 ORTHO05D000010 3.7e-13 78.6 96 43.8
arahy.Tifrunner.gnm1.ann1.N0B4J9 Arachis hypogaea HOM05D000021 ORTHO05D000010 4.8e-13 78.2 94 42.6
PSO170G1541 Papaver somniferum HOM05D000021 ORTHO05D000010 6.3e-13 77.8 96 43.8
TPR.G4892 Trifolium pratense HOM05D000021 ORTHO05D000010 6.3e-13 77.8 94 42.6
ECA236G0378 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.4e-12 75.9 97 44.3
Aa31LG9G6570 Aethionema arabicum HOM05D000021 ORTHO05D000010 3.1e-12 75.5 104 38.5
Cfa000974 Carpinus fangiana HOM05D000021 ORTHO05D000010 4.1e-12 75.1 87 46.0
Migut.H01377 Erythranthe guttata HOM05D000021 ORTHO05D000010 5.3e-12 74.7 98 42.9
Psat7g091800 Pisum sativum HOM05D000021 ORTHO05D000010 9.1e-12 73.9 93 44.1
Cc09_g09520 Coffea canephora HOM05D000021 ORTHO05D000010 1.5e-11 73.2 94 43.6
SGA_v2.0_scaffold51G18630 Striga asiatica HOM05D000021 ORTHO05D000010 2.0e-11 72.8 95 42.1
SalBow7G1819 Salvia bowleyana HOM05D000021 ORTHO05D000010 4.5e-11 71.6 94 42.6
Lsat_1_v5_gn_7_32841 Lactuca sativa HOM05D000021 ORTHO05D000010 5.9e-11 71.2 97 40.2
Medtr4g094610 Medicago truncatula HOM05D000021 ORTHO05D000010 7.7e-11 70.9 95 42.1
Oeu040959.2 Olea europaea HOM05D000021 ORTHO05D000010 7.7e-11 70.9 96 46.9
AT5G46330 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 1.3e-10 70.1 98 36.7
Thhalv10000746m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 1.3e-10 70.1 98 38.8
A09p22240 Brassica napus HOM05D000021 ORTHO05D000010 1.7e-10 69.7 98 38.8
Sabra04G0043700 Salix brachista HOM05D000021 ORTHO05D000010 2.2e-10 69.3 111 35.1
Carub.0008s0158 Capsella rubella HOM05D000021 ORTHO05D000010 2.9e-10 68.9 98 38.8
Zm00001eb070510 Zea mays HOM05D000021 ORTHO05D000010 2.9e-10 68.9 96 39.6
BcaC04g21710 Brassica carinata HOM05D000021 ORTHO05D000010 3.8e-10 68.6 98 38.8
C09p28410 Brassica napus HOM05D000021 ORTHO05D000010 3.8e-10 68.6 98 38.8
BolC9t55719H Brassica oleracea HOM05D000021 ORTHO05D000010 3.8e-10 68.6 98 38.8
Sp2g11180 Schrenkiella parvula HOM05D000021 ORTHO05D000010 8.5e-10 67.4 98 34.7
AL8G12090 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 1.1e-09 67.0 98 36.7
BraA09t37828Z Brassica rapa HOM05D000021 ORTHO05D000010 1.1e-09 67.0 98 37.8
HPP92_009452 Vanilla planifolia HOM05D000021 ORTHO05D000010 1.1e-09 67.0 94 41.5
CARHR175480 Cardamine hirsuta HOM05D000021 ORTHO05D000010 1.4e-09 66.6 99 34.3
C02p47300 Brassica napus HOM05D000021 ORTHO05D000010 4.2e-09 65.1 102 38.2
BolC2t10770H Brassica oleracea HOM05D000021 ORTHO05D000010 4.2e-09 65.1 102 38.2
SEGI_13903 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.6e-08 63.2 98 35.7
BcaB07g30842 Brassica carinata HOM05D000021 ORTHO05D000010 2.1e-08 62.8 98 35.7
Actinidia16729 Actinidia chinensis HOM05D000021 ORTHO05D000010 3.6e-08 62.0 73 46.6
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 4.7e-08 61.6 97 37.1
Lsat_1_v5_gn_7_32940 Lactuca sativa HOM05D000021 ORTHO05D000010 7.9e-08 60.8 94 41.5
THA.LOC104827727 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 7.9e-08 60.8 94 33.0
FAN16G3286 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.0e-07 58.9 65 40.0
Os04g0618700 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 3.0e-07 58.9 96 34.4
HanXRQChr04g0124921 Helianthus annuus HOM05D000021 ORTHO05D000010 3.9e-07 58.5 105 34.3
COL.COLO4_22386 Corchorus olitorius HOM05D000031 ORTHO05D001033 2.6e-06 55.8 93 34.4
CAN.G710.45 Capsicum annuum HOM05D001042 ORTHO05D007836 4.4e-06 55.1 93 37.6
Cc11_g07990 Coffea canephora HOM05D000033 ORTHO05D001583 5.7e-06 54.7 93 29.0
Dinv22940 Davidia involucrata HOM05D000029 ORTHO05D002544 5.7e-06 54.7 86 33.7
Nitab4.5_0000446g0110 Nicotiana tabacum HOM05D000029 ORTHO05D002544 5.7e-06 54.7 89 36.0
CsaV3_6G050430 Cucumis sativus L. HOM05D000029 ORTHO05D001395 7.4e-06 54.3 110 35.5
HanXRQChr09g0239761 Helianthus annuus HOM05D000021 ORTHO05D000010 7.4e-06 54.3 103 33.0
SEGI_27438 Sequoiadendron giganteum HOM05D000202 ORTHO05D000117 7.4e-06 54.3 104 30.8


User provided reference genes

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