Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.5e-164 582.0 294 100.0
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 9.8e-108 394.0 266 78.6
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.4e-106 388.3 272 76.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.6e-105 386.7 266 77.8
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.3e-104 382.9 262 76.7
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.9e-104 382.5 263 76.8
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 6.6e-104 381.3 263 74.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 7.3e-103 377.9 265 75.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 2.8e-102 375.9 266 75.2
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 6.1e-102 374.8 251 78.1
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 6.1e-102 374.8 280 72.5
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 6.1e-102 374.8 263 75.7
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.8e-101 373.2 275 72.7
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 6.8e-101 371.3 273 74.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 6.8e-101 371.3 276 72.5
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 6.8e-101 371.3 287 72.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 8.9e-101 370.9 248 77.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.2e-100 370.5 265 74.3
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.2e-100 370.5 271 74.5
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.5e-100 370.2 281 71.5
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.5e-100 370.2 285 70.5
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-100 369.8 259 73.4
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.0e-100 369.8 275 73.1
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.0e-100 369.8 263 74.5
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.0e-100 369.8 274 73.0
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.6e-100 369.4 271 74.2
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.4e-100 369.0 282 71.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 3.4e-100 369.0 264 75.8
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.7e-100 368.2 267 74.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 5.7e-100 368.2 271 74.5
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 5.7e-100 368.2 265 74.0
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.7e-99 366.7 271 74.9
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.7e-99 365.5 222 84.7
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 3.7e-99 365.5 262 74.4
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 4.9e-99 365.2 220 86.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 4.9e-99 365.2 268 74.6
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 6.4e-99 364.8 276 72.8
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 6.4e-99 364.8 271 73.4
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 6.4e-99 364.8 265 74.0
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 6.4e-99 364.8 265 73.6
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 8.3e-99 364.4 280 71.1
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.8e-98 363.2 259 75.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 2.4e-98 362.8 288 69.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 5.4e-98 361.7 283 71.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 7.0e-98 361.3 257 74.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 9.2e-98 360.9 224 81.7
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-97 360.5 218 84.4
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.5e-97 359.0 224 83.0
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 4.6e-97 358.6 266 72.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 4.6e-97 358.6 225 81.8
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 7.8e-97 357.8 296 70.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 7.8e-97 357.8 264 73.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.0e-96 357.5 218 83.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.0e-96 357.5 264 72.7
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.0e-96 357.5 222 83.3
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.3e-96 357.1 213 86.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.7e-96 356.7 266 71.8
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.3e-96 356.3 220 84.1
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-96 355.9 218 83.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 3.0e-96 355.9 223 81.6
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.0e-96 355.9 214 84.6
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.0e-96 355.9 227 82.4
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.9e-96 355.5 275 72.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 6.6e-96 354.8 218 83.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 6.6e-96 354.8 218 83.0
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 6.6e-96 354.8 214 84.1
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.6e-96 354.4 260 72.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-95 354.0 206 86.4
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.1e-95 354.0 218 83.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.1e-95 354.0 256 75.0
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-95 353.6 264 72.3
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.5e-95 353.6 229 81.2
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.9e-95 353.2 220 82.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.5e-95 352.8 275 70.2
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.6e-95 351.7 221 81.9
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 5.6e-95 351.7 214 84.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 5.6e-95 351.7 275 70.2
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.2e-94 350.5 257 73.2
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.2e-94 350.5 212 84.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.1e-94 349.7 225 80.4
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 2.1e-94 349.7 227 80.2
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 3.6e-94 349.0 262 71.8
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.7e-94 348.6 285 67.7
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.2e-94 348.2 226 79.2
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.4e-93 347.1 227 78.0
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 3.1e-93 345.9 260 70.8
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.1e-93 345.9 227 77.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 4.0e-93 345.5 225 80.9
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 4.0e-93 345.5 218 81.7
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.0e-93 345.5 257 72.8
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 5.2e-93 345.1 212 83.5
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 5.2e-93 345.1 267 70.8
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 8.9e-93 344.4 198 86.9
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.2e-92 344.0 246 74.0
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.8e-92 340.9 206 84.5
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.9e-91 339.3 213 80.8
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.9e-91 339.3 218 80.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 2.9e-91 339.3 208 83.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.7e-91 339.0 206 84.0
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 4.9e-91 338.6 208 82.2
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 4.9e-91 338.6 278 66.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 6.4e-91 338.2 208 82.7
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.4e-91 338.2 204 84.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.4e-91 338.2 204 84.3
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 8.3e-91 337.8 262 68.7
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.3e-91 337.8 262 71.0
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 8.3e-91 337.8 198 86.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-90 337.4 216 81.0
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.0e-90 334.7 304 61.5
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 7.8e-89 331.3 208 81.2
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.3e-88 330.5 231 75.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.0e-88 329.3 266 69.9
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.0e-88 329.3 208 80.8
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 5.2e-85 318.5 205 77.6
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 8.9e-85 317.8 198 79.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.9e-83 312.8 235 71.5
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 5.4e-82 308.5 239 72.0
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.1e-81 306.6 207 76.8
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 3.5e-81 305.8 200 77.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 3.9e-80 302.4 164 90.9
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.6e-80 301.2 320 56.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 7.3e-79 298.1 206 76.2
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.6e-78 295.8 193 79.3
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.1e-77 292.7 222 69.4
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 2.2e-75 286.6 162 87.7
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 4.9e-75 285.4 215 69.3
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 8.4e-75 284.6 228 64.9
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.6e-73 280.4 209 72.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.7e-73 279.6 278 60.1
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.8e-73 278.1 271 60.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.0e-72 276.2 284 57.7
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 7.3e-71 271.6 157 84.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 9.6e-71 271.2 177 78.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.1e-70 270.0 176 77.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 8.1e-70 268.1 166 78.3
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.1e-69 267.7 214 65.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 4.0e-69 265.8 218 67.0
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 2.6e-68 263.1 224 65.2
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.9e-66 256.9 159 82.4
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 6.0e-65 251.9 148 82.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.3e-64 250.8 250 59.2
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 6.6e-64 248.4 204 67.6
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.6e-62 242.7 149 81.9
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 9.0e-61 238.0 214 63.6
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 1.3e-56 224.2 209 62.7
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.0e-56 223.0 167 72.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.1e-55 221.1 181 66.9
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 3.6e-54 216.1 195 51.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 7.6e-52 208.4 132 75.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 5.5e-50 202.2 173 65.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.1e-42 177.9 321 40.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.5e-42 176.8 106 83.0
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 6.3e-38 162.2 145 61.4
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 3.1e-37 159.8 188 44.7
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.6e-36 156.8 211 41.2
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.1e-33 145.6 228 38.6
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.2e-30 135.2 84 81.0
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 5.3e-21 105.9 124 54.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 9.1e-21 105.1 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 4.5e-20 102.8 62 80.6
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.0e-16 91.7 59 79.7
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.2e-14 82.0 138 43.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.5e-12 76.6 75 54.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 9.4e-10 68.6 40 82.5
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 9.4e-10 68.6 118 39.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.7e-09 67.0 36 86.1
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.8e-08 64.3 56 67.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.8e-08 64.3 37 83.8
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.2e-06 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 2.8e-06 57.0 32 84.4


User provided reference genes

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