Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 4.6e-106 387.9 195 100.0
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 8.0e-90 334.0 195 83.6
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.8e-89 332.8 192 84.4
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 2.3e-89 332.4 195 82.1
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 8.8e-89 330.5 195 84.6
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.2e-88 330.1 191 84.3
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.5e-88 329.7 192 83.9
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 3.3e-88 328.6 191 84.3
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 4.4e-88 328.2 197 81.7
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 1.7e-87 326.2 191 81.2
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-87 326.2 191 81.2
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-87 326.2 191 81.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 1.7e-87 326.2 192 82.3
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.2e-87 325.9 191 80.6
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.2e-87 325.9 191 80.6
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 2.2e-87 325.9 192 82.8
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.8e-87 325.5 196 81.1
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.8e-87 324.7 197 80.2
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 8.2e-87 323.9 197 80.7
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 1.1e-86 323.6 194 82.0
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.1e-86 323.6 192 81.8
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.1e-86 323.6 197 81.7
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.4e-86 323.2 197 81.7
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 1.8e-86 322.8 197 79.7
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 2.4e-86 322.4 192 80.7
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.4e-86 322.4 194 82.0
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 4.1e-86 321.6 192 81.8
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 7.0e-86 320.9 192 80.7
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 9.1e-86 320.5 192 79.7
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 9.1e-86 320.5 191 82.2
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.6e-85 319.7 197 78.2
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 2.0e-85 319.3 191 80.1
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 2.0e-85 319.3 194 80.4
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 2.7e-85 318.9 192 81.2
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.5e-85 318.5 191 81.7
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 3.5e-85 318.5 197 78.2
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 5.9e-85 317.8 196 79.6
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.7e-85 317.4 191 81.7
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.3e-84 316.6 197 78.2
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.7e-84 316.2 197 80.2
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 8.5e-84 313.9 192 79.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-83 313.5 197 78.7
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-83 312.8 194 77.8
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.9e-83 312.8 230 71.3
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 4.2e-83 311.6 200 77.0
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 5.5e-83 311.2 194 77.8
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 9.4e-83 310.5 200 77.0
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.2e-82 310.1 195 76.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 4.7e-82 308.1 189 79.9
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 8.0e-82 307.4 192 77.6
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.4e-81 306.6 198 73.7
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.4e-81 306.6 198 73.7
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.8e-81 306.2 198 73.7
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 2.3e-81 305.8 198 74.7
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 2.3e-81 305.8 179 84.4
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.2e-81 304.7 205 73.7
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 6.8e-81 304.3 197 73.6
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.5e-80 303.1 198 73.2
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 2.0e-80 302.8 192 77.1
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.6e-80 302.4 195 75.4
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.6e-80 302.4 194 73.7
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 3.4e-80 302.0 197 75.1
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 3.4e-80 302.0 192 77.6
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 3.4e-80 302.0 196 77.6
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 7.5e-80 300.8 195 74.9
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 7.5e-80 300.8 198 72.7
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.3e-79 300.1 195 73.3
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 6.3e-79 297.7 197 73.6
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 6.3e-79 297.7 194 77.8
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 6.3e-79 297.7 197 74.1
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.4e-78 296.6 198 71.2
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 9.1e-78 293.9 198 71.2
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 7.7e-77 290.8 192 70.3
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-76 289.3 203 72.4
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 3.8e-76 288.5 172 82.0
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 8.6e-76 287.3 194 71.1
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 3.2e-75 285.4 180 77.8
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.2e-74 283.5 196 75.0
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 2.8e-74 282.3 164 82.9
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 3.6e-74 282.0 191 71.7
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 1.0e-73 280.4 195 69.7
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 1.8e-73 279.6 192 74.5
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.8e-73 279.6 191 69.6
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 5.2e-73 278.1 181 72.9
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 5.2e-73 278.1 199 70.4
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 2.0e-72 276.2 165 81.2
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 2.6e-72 275.8 171 77.8
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 4.4e-72 275.0 171 77.8
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 5.7e-72 274.6 176 76.7
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 5.4e-70 268.1 178 75.8
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.5e-69 265.0 164 78.0
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.7e-68 263.1 195 67.2
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.5e-67 260.0 162 77.2
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 3.3e-67 258.8 164 73.8
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 9.8e-64 247.3 154 76.0
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 2.9e-63 245.7 153 75.8
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 3.7e-63 245.4 153 75.8
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.4e-62 243.4 198 59.6
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 2.7e-61 239.2 195 64.6
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.5e-59 233.4 191 64.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 7.3e-59 231.1 173 68.8
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.4e-57 226.9 128 87.5
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-56 223.4 128 85.9
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-56 223.4 128 85.9
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 4.1e-54 215.3 137 78.8
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 7.0e-54 214.5 133 77.4
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.6e-53 213.4 128 84.4
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 4.6e-53 211.8 196 54.6
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.9e-52 208.8 131 77.9
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 2.5e-51 206.1 119 80.7
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 3.3e-51 205.7 185 54.1
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 4.7e-50 201.8 127 79.5
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 8.3e-47 191.0 190 53.2
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.4e-46 190.3 168 61.9
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 4.0e-41 172.2 105 78.1
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 9.9e-40 167.5 206 41.7
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.9e-38 163.3 146 63.7
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 4.7e-34 148.7 239 39.3
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 4.7e-34 148.7 239 39.3
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 3.4e-24 115.9 90 61.1
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-23 114.0 109 58.7
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 9.3e-22 107.8 185 33.5
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 6.0e-21 105.1 148 37.8
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 3.9e-20 102.4 64 68.8
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 6.7e-20 101.7 195 34.9
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 7.6e-16 88.2 69 58.0
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-15 87.4 52 80.8
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 1.0e-12 77.8 45 75.6
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 1.1e-09 67.8 36 83.3
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 3.1e-09 66.2 36 83.3
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 4.9e-07 58.9 31 90.3
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-06 57.8 30 86.7
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.1e-06 57.8 143 31.5
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.2e-06 55.8 30 83.3
Glyma.03G124801 Glycine max HOM05D005784 ORTHO05D004556 5.5e-06 55.5 38 76.3


User provided reference genes

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