Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.1e-147 526.6 264 100.0
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 8.5e-87 324.3 224 69.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.2e-86 322.4 243 66.7
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 4.0e-84 315.5 221 72.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.0e-84 315.5 216 70.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-82 310.1 199 71.9
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-82 310.1 199 71.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.8e-82 309.3 238 64.3
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 4.1e-81 305.4 237 64.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 5.4e-81 305.1 209 72.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 5.4e-81 305.1 209 72.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 9.2e-81 304.3 212 69.3
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.6e-80 303.5 257 63.0
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.7e-80 302.8 206 71.8
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.7e-80 302.8 237 63.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.5e-80 302.0 218 66.5
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 7.7e-80 301.2 201 71.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 3.8e-79 298.9 200 70.5
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.6e-79 297.7 216 68.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.6e-79 297.7 216 68.5
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.9e-78 296.6 209 67.5
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 4.3e-78 295.4 211 69.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 9.5e-78 294.3 234 61.1
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.0e-76 288.9 211 66.4
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.2e-76 288.5 197 69.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.2e-76 288.5 240 61.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 8.9e-76 287.7 197 69.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.2e-75 287.3 212 67.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.6e-75 286.2 218 64.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 3.4e-75 285.8 235 61.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.4e-75 285.8 212 66.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.4e-75 285.4 193 69.9
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.7e-75 285.0 217 66.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.7e-75 285.0 219 66.2
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.7e-75 285.0 196 68.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 7.5e-75 284.6 197 71.1
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 9.8e-75 284.3 208 67.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 3.7e-74 282.3 225 62.2
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 3.7e-74 282.3 212 64.6
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 3.7e-74 282.3 198 69.7
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 8.3e-74 281.2 225 62.7
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-73 280.8 225 61.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.1e-73 278.9 243 56.0
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 4.1e-73 278.9 203 65.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 5.4e-73 278.5 225 61.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 5.4e-73 278.5 225 61.3
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.0e-73 278.1 214 65.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.3e-71 273.9 216 63.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 6.6e-71 271.6 240 55.4
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 8.6e-71 271.2 195 66.7
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 8.6e-71 271.2 200 61.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.5e-70 270.4 189 68.3
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.5e-70 269.6 195 66.2
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-70 269.2 195 66.2
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 3.3e-70 269.2 195 66.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.3e-70 268.9 225 62.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-69 266.9 195 66.2
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-69 266.9 193 62.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.6e-69 266.9 199 63.3
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.4e-68 263.8 183 67.8
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.8e-68 263.5 217 60.4
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.1e-68 262.7 212 61.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.8e-68 261.5 195 64.1
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-68 261.5 195 64.1
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.3e-66 257.3 232 56.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.7e-66 256.9 212 60.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.2e-66 256.5 208 61.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.7e-66 255.8 205 59.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.1e-65 254.2 175 69.1
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.2e-65 252.7 194 64.4
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.1e-65 252.3 179 65.9
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.0e-65 251.5 180 70.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.0e-64 248.4 193 62.2
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 6.6e-63 245.0 202 55.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.5e-62 243.8 177 69.5
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.8e-60 236.9 255 48.2
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 5.2e-60 235.3 182 60.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.2e-59 234.2 255 47.8
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 9.8e-59 231.1 242 48.8
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-58 229.9 161 66.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.2e-58 229.9 207 51.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.4e-57 226.5 214 56.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.2e-57 224.6 211 51.2
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 7.8e-56 221.5 218 50.5
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.0e-55 219.5 216 51.4
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-54 217.2 158 62.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-53 213.8 214 52.8
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.8e-53 213.0 200 49.5
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.8e-53 213.0 205 51.2
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.8e-53 213.0 205 51.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-52 210.7 192 53.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.1e-52 209.5 231 45.9
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.1e-52 209.5 216 50.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-51 207.6 202 52.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-51 207.6 146 63.7
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-51 207.2 146 63.0
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-51 206.8 199 48.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.7e-50 203.8 199 46.7
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-49 201.1 195 54.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-49 199.9 139 65.5
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.4e-49 199.9 202 47.0
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 7.1e-49 198.4 207 44.9
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 3.5e-48 196.1 207 44.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.5e-48 196.1 200 44.0
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.0e-48 195.3 139 62.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.3e-47 194.1 200 45.0
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.1e-47 192.2 208 43.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 6.6e-47 191.8 204 45.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 5.6e-46 188.7 183 48.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.2e-45 187.6 203 43.8
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.1e-45 186.8 191 50.3
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.6e-45 186.0 192 46.4
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.1e-44 184.5 204 44.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.4e-44 184.1 202 47.0
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 3.1e-44 183.0 193 45.1
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.5e-43 180.6 202 44.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.0e-43 180.3 235 39.6
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.2e-42 176.8 210 40.5
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.9e-42 176.4 263 35.4
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.1e-41 174.5 183 44.8
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.2e-41 172.9 203 42.9
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 3.2e-41 172.9 199 43.7
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.5e-40 169.5 146 49.3
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-40 168.3 252 36.5
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 3.9e-39 166.0 235 37.4
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 5.1e-39 165.6 215 37.7
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.6e-38 162.2 185 43.2
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.6e-37 160.6 175 52.6
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.1e-37 160.2 164 51.8
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-37 158.7 195 46.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.2e-37 158.7 215 36.7
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.2e-37 158.7 106 63.2
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 6.2e-37 158.7 191 40.3
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.4e-36 156.8 202 37.6
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 6.9e-36 155.2 198 37.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.0e-36 154.8 199 39.2
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 9.0e-36 154.8 199 38.2
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.5e-35 152.5 185 41.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.3e-34 151.0 199 40.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-34 151.0 235 35.3
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.3e-34 151.0 210 41.4
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.1e-32 143.7 181 40.3
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.7e-31 140.6 192 40.1
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 7.4e-30 135.2 198 37.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.6e-29 132.9 172 40.7
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.1e-28 129.8 211 35.5
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.1e-25 121.3 197 35.5
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.1e-25 121.3 120 48.3
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.4e-25 120.9 120 48.3
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 4.2e-25 119.4 82 64.6
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.5e-22 110.2 100 51.0
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.1e-20 104.8 179 31.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.5e-19 99.4 228 27.6
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-17 94.4 193 33.2
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 8.7e-15 85.1 83 56.6
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-14 84.3 75 52.0
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 3.3e-14 83.2 74 56.8
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 9.6e-14 81.6 74 60.8
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.3e-13 81.3 194 27.8
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.2e-11 74.7 53 64.2
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.5e-11 74.3 170 28.8
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 2.6e-11 73.6 121 34.7
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 5.9e-11 72.4 82 47.6
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 3.2e-09 66.6 201 23.9
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 7.2e-09 65.5 65 55.4
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.7e-08 63.5 167 26.3
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.9e-06 57.4 43 60.5
Zm00001eb005260 Zea mays HOM05D004214 ORTHO05D004963 3.3e-06 56.6 55 52.7


User provided reference genes

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