Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1782.7 913 100.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 0.0e+00 1140.6 880 65.7
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 0.0e+00 1123.6 910 64.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1098.2 882 65.5
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 0.0e+00 1092.0 879 64.4
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 0.0e+00 1079.7 930 63.3
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.3e-304 1049.7 885 63.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 6.2e-302 1040.8 921 61.1
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.3e-299 1033.1 881 62.1
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.6e-292 1008.8 923 58.8
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 7.8e-289 997.3 881 59.5
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 8.7e-288 993.8 877 59.3
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.1e-287 993.4 876 60.5
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.1e-285 985.3 882 58.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.3e-285 984.6 885 58.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.1e-282 976.9 880 58.5
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.2e-281 973.4 885 58.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.3e-280 969.9 884 58.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 6.2e-278 961.1 884 58.0
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 4.0e-277 958.4 924 57.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.0e-277 958.4 883 57.5
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 5.3e-277 958.0 883 57.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.0e-276 956.1 883 57.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.6e-276 955.7 879 58.2
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.6e-276 955.7 879 58.4
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.6e-273 946.4 882 57.3
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.3e-272 942.6 876 57.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.7e-270 935.3 882 56.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 8.2e-270 934.1 763 62.6
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.2e-268 930.2 893 56.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.5e-268 929.9 921 55.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.6e-268 929.1 934 55.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 6.5e-267 924.5 883 55.8
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-266 923.7 883 55.8
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.5e-266 922.5 879 56.0
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.5e-266 922.5 879 56.0
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.9e-264 915.2 918 54.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 6.7e-264 914.4 873 56.5
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.9e-263 912.9 851 58.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.4e-263 911.0 897 56.6
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-260 902.9 883 54.9
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.6e-260 901.0 883 54.9
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.0e-256 889.0 885 54.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 5.1e-256 888.3 883 55.3
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 8.7e-256 887.5 1381 41.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.9e-255 886.3 857 55.1
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.8e-254 882.5 899 54.2
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.8e-253 879.8 836 56.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.2e-250 869.0 883 54.0
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 9.4e-250 867.5 953 51.4
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 6.1e-249 864.8 870 55.2
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 7.9e-249 864.4 884 53.5
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 6.7e-248 861.3 850 54.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.3e-247 859.0 878 53.1
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.8e-246 855.1 907 51.6
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.4e-245 852.8 910 53.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 4.5e-244 848.6 914 52.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 7.7e-244 847.8 850 53.4
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.8e-243 845.5 676 65.2
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.1e-242 844.0 886 52.5
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.4e-242 843.6 957 50.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 9.4e-242 840.9 903 50.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.1e-241 839.7 850 53.2
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.0e-240 837.4 880 53.1
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.4e-240 837.0 847 53.8
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.9e-240 835.5 862 52.9
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.3e-238 830.5 886 51.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.7e-230 803.5 882 50.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.2e-230 803.1 831 53.5
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 4.8e-222 775.4 775 55.6
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.5e-220 769.2 914 50.2
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.5e-220 768.8 857 51.5
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.5e-218 761.1 849 48.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 6.1e-217 758.4 889 48.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-216 757.7 843 48.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.0e-216 756.1 1338 38.4
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.2e-216 755.4 897 49.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.4e-213 747.3 857 48.3
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 9.2e-213 744.6 887 48.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 6.6e-211 738.4 857 48.5
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.8e-207 725.3 886 48.1
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-206 724.2 886 47.9
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.7e-201 705.7 850 46.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.4e-198 695.3 869 47.6
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.4e-197 693.3 842 45.8
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 9.5e-194 681.4 862 45.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.6e-193 680.6 879 45.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.2e-190 670.2 866 46.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 6.0e-188 662.1 886 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.0e-184 649.4 884 43.0
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.5e-183 647.5 906 41.7
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.6e-183 646.7 759 49.1
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 3.5e-180 636.3 861 43.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 4.6e-180 636.0 861 43.9
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 6.6e-179 632.1 857 43.2
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 5.6e-178 629.0 865 43.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 9.6e-178 628.2 861 43.3
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 9.6e-178 628.2 861 43.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-177 627.9 861 43.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.8e-177 626.7 866 43.1
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.8e-176 624.0 857 43.6
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 3.4e-175 619.8 858 42.4
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.4e-173 613.6 656 52.7
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 9.3e-173 611.7 853 41.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 7.8e-172 608.6 873 42.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.4e-168 597.0 902 39.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.0e-168 596.3 725 45.7
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.5e-164 583.2 863 39.9
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.5e-162 577.0 875 40.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.3e-162 576.2 876 40.8
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.1e-161 572.0 526 58.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.4e-157 560.5 862 40.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.7e-148 530.4 465 60.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.0e-143 514.2 409 65.8
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.4e-141 505.4 451 59.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.6e-140 503.1 575 51.5
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.3e-113 415.2 524 46.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.7e-113 413.7 336 62.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.7e-111 407.5 321 65.1
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.9e-110 404.1 388 54.1
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-109 402.1 813 35.2
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 6.1e-108 396.4 411 49.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.3e-102 378.6 1061 28.2
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.5e-101 374.4 386 54.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.3e-97 362.1 430 47.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 6.3e-97 359.8 385 51.2
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.4e-96 358.6 356 51.4
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 9.2e-96 355.9 428 46.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.0e-94 352.4 312 57.7
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-90 339.0 801 31.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.4e-88 332.0 359 50.4
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.2e-87 328.9 416 45.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.9e-83 312.8 632 34.3
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.0e-78 299.3 278 55.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.0e-78 297.7 481 37.2
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.9e-70 270.8 284 50.7
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.1e-69 269.2 252 52.8
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.1e-68 263.1 350 44.0
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 3.2e-64 251.1 278 50.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 4.3e-61 240.7 196 60.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.0e-58 231.9 179 68.7
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.6e-55 222.2 331 40.2
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.5e-53 214.9 178 61.2
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-50 205.3 154 65.6
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 4.8e-44 184.1 310 35.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.1e-43 183.0 359 32.0
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 5.3e-43 180.6 198 53.5
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.5e-42 179.1 465 32.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.4e-41 173.3 145 57.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 5.5e-40 170.6 195 49.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.1e-36 158.7 160 50.0
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.4e-35 155.2 180 51.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.0e-35 154.5 139 56.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.9e-33 148.3 202 45.0
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 4.2e-32 144.4 131 55.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 9.3e-32 143.3 241 35.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.0e-30 138.3 130 53.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 6.7e-30 137.1 182 52.7
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.4e-29 133.7 119 57.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 9.7e-29 133.3 166 44.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.0e-27 126.7 83 69.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.5e-26 124.4 83 67.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 3.0e-22 111.7 92 55.4
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 5.1e-22 110.9 100 56.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 6.7e-22 110.5 124 46.8
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 5.7e-21 107.5 134 41.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-20 106.3 167 39.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 6.3e-20 104.0 90 58.9
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 9.1e-19 100.1 91 52.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 5.9e-18 97.4 89 58.4
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.2e-16 90.5 113 41.6
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.7e-15 88.6 107 42.1
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.6e-15 88.2 59 69.5
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 6.1e-15 87.4 80 60.0
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 3.0e-14 85.1 71 57.7
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.4e-11 76.3 943 20.9
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 5.3e-11 74.3 48 72.9
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.0e-10 72.4 84 48.8
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 8.5e-09 67.0 92 42.4
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 2.5e-08 65.5 85 45.9
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 7.2e-08 63.9 96 35.4
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.7e-07 62.0 70 50.0
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 8.0e-07 60.5 35 71.4
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 3.0e-06 58.5 84 47.6


User provided reference genes

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