Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.7e-174 615.1 299 100.0
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 4.5e-116 421.8 242 85.1
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 3.7e-86 322.4 244 64.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.1e-85 320.9 237 64.6
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.0e-84 316.6 237 65.0
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.8e-83 312.4 241 63.5
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 5.0e-83 312.0 237 63.7
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 8.5e-83 311.2 235 64.7
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.9e-82 310.1 238 62.2
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 9.4e-82 307.8 247 62.8
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 2.7e-81 306.2 238 63.4
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 7.9e-81 304.7 238 63.4
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.5e-79 300.4 227 65.2
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.5e-79 300.4 246 63.0
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.6e-79 299.7 233 61.4
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 7.4e-79 298.1 238 60.5
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 7.4e-79 298.1 250 62.8
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 9.7e-79 297.7 236 62.7
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 2.8e-78 296.2 237 62.0
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.7e-78 295.8 219 63.9
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.1e-77 294.3 215 64.2
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 4.1e-77 292.4 226 60.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.2e-76 290.8 217 65.9
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.2e-76 290.8 203 67.5
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 3.5e-76 289.3 242 61.2
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 3.5e-76 289.3 215 63.7
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.0e-75 287.7 245 60.8
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.3e-75 287.3 235 59.6
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.3e-75 287.3 237 58.6
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.7e-75 287.0 225 63.1
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 2.9e-75 286.2 241 59.3
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 6.5e-75 285.0 236 58.1
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.1e-74 284.3 232 60.3
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 1.9e-74 283.5 219 62.6
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 5.5e-74 282.0 236 58.5
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 7.2e-74 281.6 217 65.4
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 1.2e-73 280.8 218 63.8
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.2e-73 280.8 238 58.8
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.6e-73 280.4 215 64.7
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.1e-73 280.0 214 65.0
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 2.7e-73 279.6 237 60.3
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 3.6e-73 279.3 214 64.0
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 3.6e-73 279.3 217 65.0
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 4.7e-73 278.9 226 62.4
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 6.1e-73 278.5 239 58.6
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 8.0e-73 278.1 241 59.8
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 2.3e-72 276.6 218 63.3
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.2e-72 275.4 211 62.1
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.1e-71 274.2 235 57.4
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-71 273.9 225 60.0
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.0e-71 273.5 216 60.2
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 2.0e-71 273.5 211 61.1
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 3.3e-71 272.7 231 56.7
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 4.4e-71 272.3 240 58.3
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 5.7e-71 271.9 200 64.5
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.7e-70 270.4 248 56.5
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 4.8e-70 268.9 245 56.3
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.8e-70 268.9 218 58.7
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.4e-69 266.5 226 58.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 3.1e-69 266.2 203 61.6
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.0e-68 263.5 239 55.6
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 2.6e-68 263.1 215 59.5
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 7.7e-68 261.5 206 59.7
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.7e-67 260.4 223 56.1
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 2.9e-67 259.6 237 54.9
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 5.0e-67 258.8 227 56.4
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.8e-64 250.4 229 54.1
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.5e-63 247.3 205 58.5
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.0e-63 246.9 217 55.8
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 5.7e-63 245.4 207 55.6
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 9.7e-63 244.6 265 52.5
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.3e-62 244.2 227 54.2
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.8e-62 243.0 208 54.8
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.1e-61 239.6 227 53.3
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.5e-60 235.7 228 51.8
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 3.8e-59 232.6 237 50.2
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.7e-57 226.5 232 52.6
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 3.6e-57 226.1 239 47.7
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 2.6e-55 219.9 213 52.1
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.6e-55 219.9 203 55.2
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.3e-54 217.6 244 49.2
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 2.2e-54 216.9 200 51.5
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 2.8e-54 216.5 274 47.1
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.8e-54 216.5 200 51.5
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 4.8e-54 215.7 196 52.0
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 4.8e-54 215.7 270 46.7
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.1e-53 214.5 208 50.5
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 1.1e-53 214.5 192 53.1
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 2.4e-53 213.4 275 44.4
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 3.1e-53 213.0 276 45.3
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 3.1e-53 213.0 276 45.3
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 4.1e-53 212.6 276 45.3
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 4.1e-53 212.6 276 45.3
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 4.1e-53 212.6 276 45.3
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 9.1e-53 211.5 200 51.0
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 2.7e-52 209.9 266 44.7
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 4.5e-52 209.1 277 45.1
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.7e-51 207.2 245 44.5
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 6.6e-51 205.3 257 45.5
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.9e-50 203.8 249 47.8
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 4.2e-50 202.6 276 44.6
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 2.0e-47 193.7 208 46.6
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 5.7e-47 192.2 201 47.8
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 2.1e-41 173.7 116 69.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.1e-41 172.2 203 46.3
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 1.4e-40 171.0 205 45.9
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 5.2e-40 169.1 137 58.4
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 4.4e-39 166.0 127 66.1
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-38 163.3 197 44.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-37 160.6 206 47.1
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 5.4e-37 159.1 116 64.7
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 1.2e-36 157.9 221 42.1
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-34 151.0 192 45.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-34 150.6 197 42.1
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.4e-29 133.7 234 38.5
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.2e-28 131.3 209 39.2
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.3e-27 127.9 157 44.6
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 5.1e-27 125.9 232 34.1
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 3.3e-26 123.2 232 34.5
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 1.4e-24 117.9 121 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 8.9e-24 115.2 236 32.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 5.8e-23 112.5 216 35.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-23 111.7 216 35.2
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.6e-17 94.4 189 32.3
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 4.2e-13 79.7 56 60.7
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 4.2e-13 79.7 100 42.0
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 6.6e-11 72.4 73 43.8
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.1e-10 71.6 103 42.7
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.3e-09 68.2 101 38.6
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 2.4e-08 63.9 277 24.2
Cre06.g278187 Chlamydomonas reinhardtii HOM05D066552 ORTHO05D044319 7.6e-07 58.9 201 24.9
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 9.9e-07 58.5 33 75.8
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 1.3e-06 58.2 156 26.9


User provided reference genes

Program Settings