Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006010 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.2e-105 386.3 173 100.0
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 1.4e-85 319.7 161 87.6
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 1.6e-81 306.2 160 83.1
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 2.7e-81 305.4 160 83.1
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 3.5e-81 305.1 161 82.0
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 6.0e-81 304.3 161 82.6
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 6.0e-81 304.3 160 81.9
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 1.3e-80 303.1 161 83.2
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 2.3e-80 302.4 161 82.6
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 2.3e-80 302.4 161 82.6
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 3.9e-80 301.6 161 82.0
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 5.1e-80 301.2 160 81.2
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 5.1e-80 301.2 161 82.0
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.1e-79 300.1 161 82.0
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 1.9e-79 299.3 161 82.6
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 2.5e-79 298.9 160 81.2
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 3.3e-79 298.5 161 82.0
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 3.3e-79 298.5 161 80.7
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 4.3e-79 298.1 161 79.5
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 4.3e-79 298.1 161 81.4
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 4.3e-79 298.1 161 80.1
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 4.3e-79 298.1 161 82.0
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 7.3e-79 297.4 159 81.8
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 7.3e-79 297.4 161 80.1
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 7.3e-79 297.4 161 80.7
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 9.6e-79 297.0 161 80.1
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 9.6e-79 297.0 161 79.5
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.6e-78 296.2 161 81.4
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 1.6e-78 296.2 161 79.5
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 1.6e-78 296.2 161 80.7
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 1.6e-78 296.2 161 81.4
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 2.1e-78 295.8 161 80.1
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 2.8e-78 295.4 161 79.5
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 3.6e-78 295.0 161 81.4
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 3.6e-78 295.0 159 81.8
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 6.2e-78 294.3 159 81.1
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 6.2e-78 294.3 160 78.1
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 8.1e-78 293.9 161 78.3
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 8.1e-78 293.9 161 78.3
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 8.1e-78 293.9 161 80.1
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 8.1e-78 293.9 161 79.5
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 8.1e-78 293.9 161 80.1
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 1.1e-77 293.5 161 78.3
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 1.1e-77 293.5 161 78.3
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 1.4e-77 293.1 160 79.4
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.8e-77 292.7 161 79.5
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.8e-77 292.7 161 77.0
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 2.4e-77 292.4 155 81.9
Cpa.g.c38225 Carica papaya HOM05D003384 ORTHO05D005024 2.4e-77 292.4 161 78.9
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 2.4e-77 292.4 161 77.0
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 3.1e-77 292.0 161 77.6
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 3.1e-77 292.0 161 77.6
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 4.0e-77 291.6 161 77.6
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 9.0e-77 290.4 161 78.3
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 9.0e-77 290.4 161 78.3
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 9.0e-77 290.4 160 78.1
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 9.0e-77 290.4 161 77.0
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 9.0e-77 290.4 160 79.4
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 9.0e-77 290.4 160 77.5
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.2e-76 290.0 161 78.3
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 1.2e-76 290.0 153 81.0
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.6e-76 288.9 156 79.5
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.6e-76 288.9 156 82.1
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 3.4e-76 288.5 161 77.0
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 4.4e-76 288.1 161 77.0
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 4.4e-76 288.1 160 78.8
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-76 288.1 160 78.8
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 4.4e-76 288.1 160 78.8
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 4.4e-76 288.1 158 77.8
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 5.8e-76 287.7 159 78.6
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 5.8e-76 287.7 161 76.4
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 9.9e-76 287.0 161 77.6
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 9.9e-76 287.0 154 78.6
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 9.9e-76 287.0 160 76.9
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 1.3e-75 286.6 159 77.4
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-75 286.6 160 78.1
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-75 286.6 160 78.8
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.3e-75 286.6 161 77.0
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.7e-75 286.2 156 78.2
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 1.7e-75 286.2 154 79.2
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 1.7e-75 286.2 156 80.1
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 2.2e-75 285.8 156 78.2
AUR62009268 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.9e-75 285.4 161 77.6
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 2.9e-75 285.4 160 78.1
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 2.9e-75 285.4 156 79.5
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 6.4e-75 284.3 161 75.2
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.4e-74 283.1 161 74.5
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.9e-74 282.7 156 76.9
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 1.9e-74 282.7 157 77.1
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 1.9e-74 282.7 161 77.0
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 1.9e-74 282.7 161 75.8
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 2.4e-74 282.3 161 76.4
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 2.4e-74 282.3 156 79.5
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 3.2e-74 282.0 161 75.2
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 4.2e-74 281.6 160 76.9
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 9.3e-74 280.4 156 75.0
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 1.6e-73 279.6 160 76.2
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 1.6e-73 279.6 160 76.2
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 3.5e-73 278.5 161 75.2
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 6.0e-73 277.7 163 75.5
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 1.3e-72 276.6 153 77.1
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 1.7e-72 276.2 158 76.6
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 1.7e-72 276.2 160 75.0
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 1.7e-72 276.2 160 75.0
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 1.7e-72 276.2 160 75.0
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.7e-72 276.2 160 75.0
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 3.0e-72 275.4 160 75.0
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 3.0e-72 275.4 160 75.0
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 3.0e-72 275.4 160 75.0
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 3.0e-72 275.4 160 75.0
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 3.0e-72 275.4 160 75.0
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 3.9e-72 275.0 158 75.9
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 5.1e-72 274.6 154 76.6
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 1.1e-71 273.5 153 75.2
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 1.9e-71 272.7 159 72.3
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 5.6e-71 271.2 156 73.1
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 5.6e-71 271.2 154 76.0
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 9.6e-71 270.4 158 74.7
SalBow2G3548 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.8e-70 268.9 161 73.9
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 6.2e-70 267.7 152 74.3
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 5.3e-69 264.6 154 73.4
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 6.9e-69 264.2 154 72.7
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 6.9e-69 264.2 165 70.9
SEGI_36858 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 7.6e-68 260.8 153 72.5
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 9.9e-68 260.4 161 70.2
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.3e-67 260.0 155 74.8
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 2.9e-67 258.8 149 73.2
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 4.6e-65 251.5 158 67.1
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 1.3e-62 243.4 153 65.4
Medtr3g085010 Medicago truncatula HOM05D003384 ORTHO05D005024 6.2e-62 241.1 160 66.9
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 1.2e-60 236.9 154 64.3
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 3.4e-60 235.3 154 66.2
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 1.7e-59 233.0 132 78.0
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 6.0e-57 224.6 131 73.3
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 4.6e-49 198.4 158 55.7
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 8.7e-48 194.1 160 58.1
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 1.6e-46 189.9 152 59.2
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 8.2e-46 187.6 148 57.4
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 1.4e-42 176.8 152 50.7
TAR629G1400 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.5e-39 166.0 93 79.6
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 4.3e-39 165.2 89 80.9
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 1.5e-36 156.8 104 66.3
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 1.6e-33 146.7 92 70.7
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 1.0e-32 144.1 94 70.2
Haze_26202 Corylus avellana HOM05D003384 ORTHO05D005024 1.1e-29 134.0 146 43.2
SalBow1G4952 Salvia bowleyana HOM05D003384 ORTHO05D005024 5.3e-29 131.7 69 76.8
Oeu031352.2 Olea europaea HOM05D003384 ORTHO05D005024 1.4e-24 117.1 58 82.8
Cfa023973 Carpinus fangiana HOM05D003384 ORTHO05D005024 2.2e-22 109.8 157 38.9
BcaB05g24847 Brassica carinata HOM05D003384 ORTHO05D005024 8.0e-17 91.3 82 59.8
CAN.G426.19 Capsicum annuum HOM05D000212 ORTHO05D005509 1.2e-15 87.4 82 50.0
MD10G1018700 Malus domestica HOM05D003384 ORTHO05D005024 2.9e-11 72.8 103 36.9
BcaC03g15493 Brassica carinata HOM05D002057 ORTHO05D002231 5.5e-10 68.6 77 45.5
A02p19230 Brassica napus HOM05D003384 ORTHO05D032993 4.0e-08 62.4 37 67.6
C02p31820 Brassica napus HOM05D003384 ORTHO05D032993 4.0e-08 62.4 37 67.6
BolC2t09209H Brassica oleracea HOM05D003384 ORTHO05D032993 5.2e-08 62.0 36 69.4


User provided reference genes

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