Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1265.4 637 100.0
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 636 90.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 637 91.1
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 637 90.9
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 637 90.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 637 90.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 635 91.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 637 90.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 637 89.6
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 664 88.0
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 637 90.1
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 90.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 90.3
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 637 89.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 637 89.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 635 90.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 637 89.2
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 635 89.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 637 89.6
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 635 89.6
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 637 89.2
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 637 89.2
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 637 90.1
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 634 89.9
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 637 89.5
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 634 89.4
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 637 89.2
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 637 89.6
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 635 89.6
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 635 89.1
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 636 89.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 631 90.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 637 89.6
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 637 89.8
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 637 89.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 647 88.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 634 88.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 637 87.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 635 88.7
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 633 89.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 631 89.7
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 633 89.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 633 89.1
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 637 88.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 637 89.8
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 633 88.8
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 633 88.8
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 630 88.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 637 88.2
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 633 88.8
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 633 88.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 631 88.7
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 637 88.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 634 87.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 633 88.8
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 635 88.2
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 637 88.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 635 87.7
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 635 87.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 628 89.5
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 637 88.4
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 634 86.9
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 637 87.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 637 87.6
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 630 87.8
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 630 87.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 637 88.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 630 87.8
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 630 87.8
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 635 87.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 631 88.1
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 630 87.5
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 633 87.5
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 630 87.5
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 630 87.5
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 630 87.5
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 630 87.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 630 87.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 630 87.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 632 88.1
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 637 86.2
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 632 87.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 86.0
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 631 87.2
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1115.5 630 86.8
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1114.4 632 86.6
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 637 86.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 630 86.5
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 632 87.2
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1110.1 633 87.5
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 630 86.5
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 634 85.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 630 85.7
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 637 85.2
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1095.9 634 84.9
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 635 85.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1085.5 630 85.2
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 628 83.0
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.5e-310 1068.9 628 82.8
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.3e-310 1067.8 647 83.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.1e-308 1061.2 582 90.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 7.6e-307 1056.6 628 82.0
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.7e-296 1021.5 631 79.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.2e-290 1001.9 534 92.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 4.1e-284 981.1 541 90.4
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 6.9e-284 980.3 632 76.3
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.8e-279 965.7 534 89.0
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 6.1e-272 940.6 648 73.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.1e-264 915.6 629 73.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.8e-261 905.2 635 72.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 3.7e-261 904.8 649 71.0
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.5e-257 892.1 499 88.2
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.3e-247 859.0 503 85.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-244 850.1 634 71.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.0e-242 843.6 503 84.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.2e-238 830.1 635 70.6
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.1e-232 809.3 638 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.0e-231 805.1 497 81.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 9.2e-228 793.9 638 62.5
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.6e-200 703.4 444 79.5
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.7e-195 686.0 535 69.2
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 5.8e-182 641.7 643 53.3
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.9e-180 636.7 446 73.8
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.9e-178 629.0 354 87.9
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.7e-163 579.7 411 73.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 4.5e-158 562.4 315 89.8
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.2e-148 528.5 296 89.5
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 5.9e-134 482.3 271 88.9
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.0e-114 418.3 527 43.5
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.3e-96 358.2 201 87.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-85 321.6 240 69.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 5.6e-84 316.2 231 70.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.1e-83 314.3 183 85.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.7e-77 292.4 637 34.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 7.6e-73 279.3 163 83.4
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.4e-72 276.2 163 83.4
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.6e-57 227.6 273 49.1
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.6e-51 208.4 230 54.3
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.2e-41 175.6 103 84.5
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 2.9e-40 171.0 104 77.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.9e-40 171.0 99 85.9
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.2e-39 167.2 103 78.6
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.6e-38 164.1 86 86.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.0e-37 161.0 90 88.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.3e-36 157.5 158 58.9
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.0e-33 148.3 172 52.3
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 7.7e-33 146.4 91 79.1
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.9e-31 141.7 74 83.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 8.0e-30 136.3 125 59.2
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 8.0e-22 109.8 116 53.4
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.2e-20 105.9 53 96.2
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.2e-17 95.9 63 68.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.2e-17 95.9 60 76.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 7.7e-17 93.2 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.9e-16 91.3 49 85.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.9e-15 88.6 57 73.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.5e-12 79.0 67 55.2
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 7.0e-10 70.1 43 76.7


User provided reference genes

Program Settings