Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.4e-215 751.9 374 100.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.0e-145 519.6 392 67.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-141 506.9 386 67.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.2e-140 502.3 399 66.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.4e-140 500.7 388 68.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.6e-133 478.0 377 64.7
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 8.0e-131 471.1 377 65.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-129 467.2 377 64.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.7e-128 463.4 377 64.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.2e-128 463.0 376 63.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 3.7e-128 462.2 375 63.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.3e-128 461.1 288 76.4
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.4e-127 460.3 343 66.8
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 7.0e-127 458.0 378 63.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.6e-126 456.8 387 61.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.5e-126 455.7 377 61.3
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.5e-126 455.3 288 74.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.8e-126 454.5 361 63.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.0e-125 454.1 381 62.7
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.6e-125 451.4 377 61.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.1e-124 450.7 390 60.5
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-124 450.7 378 60.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.9e-124 449.9 377 61.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.9e-124 449.9 376 63.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.5e-124 449.5 390 60.0
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.5e-124 449.5 378 60.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 4.3e-124 448.7 342 67.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.6e-124 448.4 377 61.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-123 447.2 373 62.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.0e-122 444.1 379 61.5
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.8e-122 443.4 379 60.9
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.3e-122 443.0 379 61.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.0e-122 442.6 373 58.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.2e-122 441.8 372 60.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.5e-121 440.3 380 60.0
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.3e-120 437.2 375 59.2
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.7e-120 436.8 345 62.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.2e-120 436.4 377 59.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.2e-120 436.4 345 61.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.9e-120 436.0 341 64.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.7e-120 435.6 378 60.1
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 4.9e-120 435.3 379 59.1
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 6.4e-120 434.9 376 58.5
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-119 434.1 335 63.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.9e-119 433.3 380 58.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.9e-119 433.3 379 59.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.4e-119 433.0 373 61.4
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.4e-119 433.0 362 59.7
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.4e-119 433.0 343 63.6
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.4e-119 431.8 378 58.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.6e-118 430.3 373 60.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.0e-118 429.9 325 63.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-118 429.9 378 59.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-118 429.9 378 59.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.0e-118 429.9 347 61.1
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.0e-118 429.9 378 59.8
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.6e-118 428.7 406 55.7
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.8e-118 427.9 382 59.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.3e-117 427.2 373 59.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.3e-117 427.2 370 58.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-117 426.8 377 57.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.7e-117 426.8 373 57.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.0e-117 426.0 370 58.6
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.9e-116 423.3 448 52.7
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.2e-115 420.6 346 60.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-115 420.2 377 58.1
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.8e-115 419.5 359 60.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 8.0e-115 417.9 444 52.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.1e-114 417.5 347 59.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.3e-114 416.4 378 58.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.0e-113 413.3 377 56.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.0e-113 413.3 333 60.4
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.8e-113 411.8 355 59.7
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 9.8e-113 411.0 381 55.6
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.7e-112 410.2 376 57.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 6.4e-112 408.3 376 57.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.3e-112 407.9 314 63.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-111 407.5 285 68.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.4e-111 407.1 298 65.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-111 406.0 388 55.7
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.1e-111 405.6 291 68.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.1e-111 405.6 378 55.8
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 5.4e-111 405.2 285 66.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-111 404.8 284 67.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 9.2e-111 404.4 379 55.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.6e-110 403.7 291 67.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.1e-110 403.3 301 62.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 4.6e-110 402.1 288 68.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.0e-110 401.7 375 55.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.0e-110 401.7 293 66.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 7.8e-110 401.4 372 58.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 7.8e-110 401.4 290 65.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 8.6e-109 397.9 377 54.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.1e-108 397.5 319 61.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.5e-108 397.1 378 55.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.5e-108 396.4 376 55.9
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.5e-108 396.4 377 54.6
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.6e-108 395.2 283 66.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 9.5e-108 394.4 377 56.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.6e-107 393.7 300 65.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.1e-107 393.3 348 56.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.7e-107 392.1 377 55.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 4.7e-107 392.1 299 63.2
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.7e-107 392.1 342 59.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 6.2e-107 391.7 291 63.6
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.0e-106 389.0 302 61.9
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 4.0e-106 389.0 351 56.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 8.9e-106 387.9 290 64.8
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-105 387.5 381 54.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-105 387.5 302 61.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.2e-105 387.5 302 61.9
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.2e-105 387.5 290 63.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.5e-105 387.1 381 55.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-105 386.7 349 57.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-105 386.3 290 63.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-105 386.3 302 62.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-105 386.0 360 55.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.4e-105 386.0 360 55.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.4e-105 386.0 360 55.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.4e-105 385.6 349 57.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.9e-104 382.1 376 54.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 8.3e-104 381.3 383 53.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 8.3e-104 381.3 367 54.0
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-103 380.9 376 53.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 9.2e-103 377.9 298 61.7
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-102 377.5 290 63.4
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.9e-101 372.5 353 53.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 6.6e-101 371.7 374 53.2
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-100 370.9 348 54.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.9e-100 370.2 285 63.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.5e-100 369.8 290 62.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 7.3e-100 368.2 312 58.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-99 367.5 312 57.7
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-99 367.1 296 60.1
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.8e-99 366.3 307 59.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.6e-99 365.9 312 57.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.1e-99 364.8 312 57.7
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.0e-98 362.5 311 58.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.6e-94 350.5 482 43.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.5e-92 344.0 288 58.7
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.4e-89 332.8 262 60.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.1e-87 325.1 288 53.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 5.6e-84 315.5 291 55.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 7.3e-84 315.1 202 74.3
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.5e-81 305.8 308 54.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.4e-80 302.0 287 52.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.2e-78 297.7 342 48.8
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.0e-69 266.5 253 56.5
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.1e-69 265.8 202 62.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 8.2e-67 258.5 276 50.7
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.0e-66 256.1 220 58.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.9e-57 225.7 230 50.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-55 220.7 291 42.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.1e-46 189.1 104 82.7
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.4e-42 177.2 105 75.2
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 4.2e-39 166.4 369 33.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 4.2e-31 139.8 149 48.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.4e-28 130.2 98 61.2
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-24 118.6 294 33.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.8e-24 116.7 144 43.1
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.6e-22 110.2 225 33.8
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.3e-21 107.5 200 37.5
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.6e-16 89.0 112 48.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.4e-10 70.9 57 64.9
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 8.6e-08 62.4 246 28.9
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 9.5e-07 58.9 240 28.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 9.5e-07 58.9 45 57.8


User provided reference genes

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