Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.3e-290 1002.3 477 100.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 7.8e-248 860.1 477 84.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 5.1e-247 857.4 475 85.7
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.5e-246 855.1 479 83.1
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 3.3e-246 854.7 478 83.7
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 9.6e-246 853.2 477 84.9
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-245 852.4 475 84.8
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.1e-245 852.0 478 82.8
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 4.7e-245 850.9 479 83.1
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 6.2e-245 850.5 480 82.9
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 6.2e-245 850.5 480 82.9
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.1e-244 849.7 475 84.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 2.4e-244 848.6 479 83.1
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 6.8e-244 847.0 468 84.0
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.5e-243 845.9 468 83.8
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.5e-243 845.9 480 82.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.0e-243 845.5 475 84.0
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.0e-243 845.5 479 82.3
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.6e-243 845.1 475 83.8
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.4e-243 844.3 480 82.3
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 5.8e-243 844.0 470 84.3
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.3e-242 842.8 478 82.6
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.3e-242 842.8 476 82.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 2.9e-242 841.6 470 83.0
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 3.8e-242 841.3 476 83.0
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 4.9e-242 840.9 475 83.6
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.4e-242 840.5 475 83.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 6.4e-242 840.5 479 81.2
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.4e-241 839.3 469 82.9
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.9e-241 839.0 476 83.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 7.1e-241 837.0 481 82.7
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.1e-241 837.0 483 83.0
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.1e-241 837.0 484 82.6
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 7.1e-241 837.0 478 82.6
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.2e-240 836.3 477 82.4
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.6e-240 835.9 478 81.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 2.7e-240 835.1 472 82.6
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.7e-239 832.4 469 82.9
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.7e-239 832.4 479 81.4
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.7e-239 832.4 475 81.7
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.7e-239 832.4 478 80.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.7e-239 832.4 479 83.1
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.0e-239 831.6 479 81.4
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.0e-239 831.6 479 82.9
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 5.1e-239 830.9 478 81.6
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.6e-239 830.5 478 81.6
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.1e-238 829.7 478 81.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.5e-238 829.3 478 82.0
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.5e-238 829.3 478 80.3
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.3e-238 828.2 469 83.2
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 7.3e-238 827.0 479 82.3
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.6e-238 826.6 472 82.6
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.3e-237 826.2 482 81.3
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.1e-237 825.5 470 83.6
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.1e-237 825.5 471 82.2
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 3.6e-237 824.7 479 82.5
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 8.1e-237 823.5 470 82.1
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.4e-236 822.8 470 82.1
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.8e-236 822.4 450 85.6
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 4.0e-236 821.2 469 81.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 5.3e-236 820.8 470 81.7
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.9e-236 820.5 473 82.0
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 6.9e-236 820.5 479 80.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 6.9e-236 820.5 485 80.0
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 9.0e-236 820.1 478 81.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.2e-235 819.7 477 80.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 81.2
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.5e-235 819.3 470 81.7
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.5e-235 819.3 438 86.8
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 2.0e-235 818.9 475 81.7
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.0e-235 818.9 478 82.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.6e-235 818.5 470 81.9
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 4.4e-235 817.8 470 82.8
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 4.4e-235 817.8 455 85.3
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.3e-234 816.2 470 81.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.2e-234 815.5 471 80.9
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.2e-234 815.5 457 83.8
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 6.4e-234 813.9 469 80.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 6.4e-234 813.9 474 82.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 8.4e-234 813.5 472 80.5
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 8.4e-234 813.5 476 80.9
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.4e-233 812.8 471 81.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.9e-233 812.4 470 81.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.9e-233 812.4 471 80.5
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 3.2e-233 811.6 469 81.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.2e-233 811.2 478 80.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 4.2e-233 811.2 470 81.1
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 9.3e-233 810.1 470 81.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.6e-232 809.3 486 80.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.0e-231 805.1 479 79.3
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 8.7e-231 803.5 479 80.2
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 3.3e-230 801.6 494 77.3
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 4.0e-228 794.7 478 77.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.2e-227 793.1 455 80.7
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 5.8e-227 790.8 457 80.7
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.9e-226 787.7 495 77.8
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.9e-225 785.8 478 77.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.1e-225 783.9 491 77.4
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.0e-224 780.8 456 81.6
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 9.6e-222 773.5 475 78.1
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 8.1e-221 770.4 473 77.8
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.9e-212 740.7 500 73.0
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.6e-211 738.8 478 74.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.4e-211 738.4 478 75.1
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.8e-210 734.9 506 72.3
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 5.7e-206 721.1 476 71.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 7.4e-206 720.7 480 72.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 9.7e-206 720.3 494 72.5
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.8e-204 716.1 473 71.0
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 4.6e-200 701.4 449 72.2
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.0e-199 698.7 431 75.9
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 5.3e-196 688.0 383 81.7
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.5e-190 669.8 482 69.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.7e-182 641.3 458 69.2
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 4.1e-180 635.2 460 69.3
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.9e-177 626.3 363 79.3
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 9.4e-177 624.0 367 78.7
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.3e-159 566.2 480 59.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 9.8e-150 534.3 345 76.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 4.7e-144 515.4 304 78.0
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 9.8e-142 507.7 281 84.3
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 8.3e-141 504.6 410 60.2
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.9e-140 503.4 275 85.1
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.3e-138 497.3 304 76.6
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.5e-137 493.0 452 54.0
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.5e-121 440.7 308 69.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.3e-121 439.1 307 69.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 3.3e-105 386.3 211 85.8
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.4e-101 371.7 228 75.0
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.4e-101 371.7 228 75.0
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.1e-100 371.3 225 73.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.1e-96 357.1 407 49.4
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 6.5e-93 345.5 200 82.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.8e-88 330.1 454 45.2
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 6.5e-77 292.4 418 44.0
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 8.5e-69 265.4 152 78.3
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.1e-67 260.8 170 71.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.4e-66 258.1 170 71.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.4e-63 248.1 172 68.0
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 7.0e-63 245.7 172 67.4
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.5e-46 190.3 99 82.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.5e-46 190.3 99 82.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 9.5e-44 182.2 111 75.7
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.6e-38 164.9 105 72.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.7e-37 161.4 95 84.2
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 3.1e-34 150.6 97 72.2
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 5.4e-31 139.8 77 81.8
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.1e-27 127.9 77 77.9
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.2e-27 126.3 85 69.4
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.3e-21 108.6 135 41.5
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.1e-20 105.5 56 83.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 3.6e-19 100.5 57 77.2
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.7e-16 91.7 45 91.1
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 8.4e-16 89.4 72 63.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 8.4e-16 89.4 72 63.9
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 3.9e-13 80.5 73 57.5
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.1e-12 79.0 46 78.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.4e-10 72.0 70 48.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 9.0e-10 69.3 34 85.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.2e-07 60.8 61 55.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 1.2e-06 58.9 34 82.4
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 2.7e-06 57.8 46 60.9


User provided reference genes

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