Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 4.8e-307 1057.0 525 100.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.6e-305 1051.2 524 99.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.7e-304 1048.5 524 99.2
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.7e-304 1048.5 524 99.2
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.7e-304 1048.5 524 99.2
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.7e-304 1048.5 524 99.2
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.7e-304 1048.5 524 99.2
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-295 1019.2 524 97.3
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 524 96.6
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.3e-291 1005.7 524 96.6
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 5.3e-290 1000.3 524 96.2
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.9e-288 994.6 523 96.2
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 3.0e-285 984.6 523 95.2
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.0e-285 984.6 495 98.6
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-284 982.2 524 94.8
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-284 982.2 524 94.8
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-284 982.2 524 94.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.7e-283 978.8 524 94.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-283 977.6 524 94.8
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-283 977.6 524 94.8
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.5e-281 970.7 524 94.3
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-279 965.7 495 97.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.4e-279 963.0 495 97.4
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.4e-279 963.0 495 97.4
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.4e-279 963.0 495 97.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.6e-278 962.2 524 92.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.7e-273 944.9 524 91.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 7.5e-268 926.8 494 94.7
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.0e-261 906.4 524 89.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.2e-259 898.7 480 93.8
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.7e-256 889.0 513 90.1
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 3.9e-256 887.9 524 87.0
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.6e-255 884.0 495 91.9
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.3e-253 878.6 524 85.3
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.5e-252 875.9 453 96.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 6.8e-245 850.5 508 87.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.4e-244 847.8 503 88.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.1e-242 843.2 522 84.9
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 6.0e-241 837.4 421 99.8
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 2.3e-240 835.5 420 99.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.7e-235 819.3 485 88.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.1e-234 816.6 495 85.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.1e-230 800.4 453 90.7
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.3e-222 776.5 388 99.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.6e-215 751.1 448 87.3
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.8e-214 748.0 485 82.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-213 746.9 451 86.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-199 699.1 458 80.8
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.5e-186 656.0 351 94.0
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-184 649.4 453 76.6
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 3.2e-178 629.0 456 75.4
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.2e-170 602.4 523 64.2
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.8e-168 596.7 439 73.8
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-168 595.9 314 93.9
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.4e-162 574.3 285 98.6
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.3e-158 563.9 297 97.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.8e-158 562.0 285 97.2
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-157 560.1 351 82.1
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 4.0e-152 542.3 314 87.3
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.7e-140 503.1 365 74.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 5.0e-139 498.8 250 98.0
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.6e-139 498.0 251 97.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 4.3e-138 495.7 659 48.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.9e-133 480.3 250 95.2
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.2e-133 479.6 274 87.6
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.2e-133 479.6 274 87.6
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 1.3e-131 474.2 250 94.4
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-131 474.2 265 92.1
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 2.6e-127 459.9 242 96.7
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.9e-122 443.7 261 87.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 2.6e-119 433.3 227 97.4
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.7e-115 420.6 524 51.1
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 6.6e-115 418.7 307 73.6
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.1e-113 413.7 235 88.1
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.4e-111 406.0 432 53.0
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.6e-105 386.3 312 70.8
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-105 386.0 222 91.9
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.8e-104 384.0 204 96.1
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 9.3e-101 371.7 185 96.8
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.1e-97 360.5 504 45.4
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-96 357.8 185 95.1
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-96 357.8 185 95.1
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-96 357.8 185 95.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.6e-95 352.1 351 59.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 6.4e-94 349.0 185 92.4
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.6e-92 344.4 262 76.3
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.3e-89 334.7 427 52.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.4e-87 326.6 328 56.7
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.7e-84 317.0 321 57.0
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 4.3e-82 309.7 369 43.6
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 5.7e-82 309.3 161 96.9
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 7.4e-82 308.9 197 79.7
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-73 280.8 159 89.9
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-67 261.2 434 44.5
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.5e-62 242.7 244 57.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-61 239.6 183 69.9
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 6.1e-60 236.1 231 61.0
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 7.9e-60 235.7 283 51.2
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 8.2e-57 225.7 118 96.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-56 225.3 134 77.6
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 5.3e-56 223.0 241 56.8
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-55 221.9 175 67.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-54 218.0 128 85.2
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-52 211.8 148 77.7
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.6e-52 211.5 101 97.0
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.7e-52 210.7 138 81.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.2e-51 206.5 105 93.3
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.2e-51 206.5 105 93.3
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 8.8e-51 205.7 137 81.0
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 7.7e-47 192.6 100 95.0
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-46 190.3 227 51.1
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-44 184.9 109 82.6
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.7e-44 184.1 91 95.6
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.0e-43 182.2 87 96.6
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.4e-43 181.8 90 95.6
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.2e-41 174.5 91 93.4
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 6.3e-41 172.9 153 66.0
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 5.4e-40 169.9 94 85.1
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.0e-39 167.9 95 91.6
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 3.5e-39 167.2 85 92.9
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 7.7e-39 166.0 197 50.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-38 165.6 91 92.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-38 164.5 156 60.9
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-38 163.7 165 58.8
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.8e-38 163.7 104 77.9
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.2e-34 152.1 127 63.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-34 152.1 92 81.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-34 151.8 163 59.5
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.0e-34 151.4 87 82.8
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 4.4e-34 150.2 81 90.1
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.4e-32 144.4 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.2e-27 126.7 112 66.1
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-27 125.9 80 78.8
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.0e-26 124.8 129 58.9
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 4.1e-24 117.1 56 98.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.6e-23 113.6 92 72.8
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.8e-23 112.8 76 73.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.3e-22 112.1 64 84.4
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 8.6e-22 109.4 70 78.6
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 7.3e-21 106.3 73 69.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-20 104.0 68 79.4
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 8.0e-20 102.8 53 88.7
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 8.9e-19 99.4 70 75.7
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.2e-17 94.7 47 97.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 6.4e-17 93.2 46 93.5
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 1.6e-15 88.6 50 86.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.0e-14 83.6 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 6.6e-14 83.2 48 87.5
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.6e-13 80.1 42 90.5
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 3.6e-12 77.4 56 71.4
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.1e-11 74.3 50 78.0
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 8.9e-11 72.8 33 97.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-10 72.4 36 91.7
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 4.4e-10 70.5 35 91.4
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-09 68.2 61 60.7
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 2.4e-08 64.7 46 71.7


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