Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.8e-127 459.1 217 100.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.3e-39 164.5 103 74.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 7.4e-28 128.3 95 63.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 7.4e-28 128.3 96 61.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 9.6e-28 127.9 96 66.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.8e-27 126.3 94 59.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.8e-27 125.6 97 60.8
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 4.8e-27 125.6 93 63.4
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 8.2e-27 124.8 97 58.8
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 8.2e-27 124.8 98 63.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-26 124.4 97 59.8
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-26 124.0 95 58.9
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-26 124.0 95 58.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.4e-26 124.0 93 61.3
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.4e-26 123.2 98 60.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.1e-26 122.9 98 58.2
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.1e-26 122.5 96 61.5
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 9.0e-26 121.3 97 58.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.0e-25 120.2 97 55.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.0e-25 120.2 95 60.0
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.6e-25 119.8 98 57.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.4e-25 119.4 95 55.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.4e-25 119.4 97 57.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 4.5e-25 119.0 98 58.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 5.9e-25 118.6 101 56.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.0e-24 117.9 99 57.6
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.3e-24 117.5 97 55.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-24 117.5 98 55.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.7e-24 117.1 99 52.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.7e-24 117.1 98 58.2
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.2e-24 116.7 93 58.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.9e-24 116.3 92 57.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.9e-24 116.3 97 56.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.9e-24 116.3 97 55.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 5.0e-24 115.5 97 59.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 6.5e-24 115.2 94 59.6
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 8.5e-24 114.8 99 58.6
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 8.5e-24 114.8 101 57.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 8.5e-24 114.8 97 57.7
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 8.5e-24 114.8 94 57.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.1e-23 114.4 93 57.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-23 114.0 96 57.3
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-23 114.0 96 58.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-23 114.0 96 58.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.5e-23 113.2 97 53.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.5e-23 113.2 93 58.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.2e-23 112.5 97 55.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.2e-23 112.5 97 54.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 5.5e-23 112.1 96 59.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 7.2e-23 111.7 66 69.7
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 7.2e-23 111.7 66 69.7
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 7.2e-23 111.7 66 69.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 7.2e-23 111.7 99 52.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 7.2e-23 111.7 100 54.0
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.2e-23 111.7 114 50.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.3e-23 111.3 100 53.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.2e-22 110.9 94 58.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-22 110.9 99 54.5
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.2e-22 110.9 94 58.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.1e-22 110.2 99 51.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-22 110.2 97 55.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-22 110.2 97 55.7
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.1e-22 110.2 64 73.4
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.7e-22 109.8 72 65.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.7e-22 109.8 99 51.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.7e-22 109.8 99 50.5
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.6e-22 109.4 99 52.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.6e-22 109.4 105 52.4
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.6e-22 109.4 95 54.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.6e-22 109.4 95 54.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.6e-22 109.4 95 53.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.6e-22 109.0 94 57.4
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.1e-22 108.6 93 54.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-22 108.6 73 67.1
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 6.1e-22 108.6 95 53.7
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.9e-22 108.2 99 51.5
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.9e-22 108.2 99 51.5
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 7.9e-22 108.2 125 44.8
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 7.9e-22 108.2 94 57.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 7.9e-22 108.2 95 56.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 7.9e-22 108.2 101 54.5
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.0e-21 107.8 62 74.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.0e-21 107.8 64 73.4
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-21 107.5 95 52.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.3e-21 106.7 121 46.3
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.0e-21 106.3 66 66.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.0e-21 106.3 95 54.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 3.0e-21 106.3 67 70.1
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.9e-21 105.9 97 50.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.1e-21 105.5 96 54.2
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.1e-21 105.5 62 72.6
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 6.7e-21 105.1 93 54.8
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 6.7e-21 105.1 96 54.2
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 6.7e-21 105.1 66 68.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-20 104.4 95 52.6
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.1e-20 104.4 95 54.7
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.9e-20 103.6 93 51.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.9e-20 103.6 93 52.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.9e-20 103.6 60 73.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.3e-20 102.8 66 63.6
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.3e-20 102.4 72 61.1
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.7e-20 102.1 104 47.1
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 7.4e-20 101.7 66 65.2
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.6e-19 100.5 62 69.4
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 6.3e-19 98.6 65 69.2
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 6.3e-19 98.6 64 62.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.3e-19 98.6 65 69.2
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 8.2e-19 98.2 65 67.7
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.4e-18 97.4 65 67.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.8e-18 97.1 62 66.1
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.8e-18 97.1 67 68.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.4e-18 96.7 66 68.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.1e-18 96.3 62 69.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.1e-18 96.3 65 67.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.1e-18 96.3 65 67.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.1e-18 95.9 97 47.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.9e-18 95.1 68 57.4
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 9.1e-18 94.7 65 64.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-17 94.4 69 59.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.5e-17 94.0 65 66.2
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.5e-17 94.0 66 65.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.5e-17 94.0 66 65.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.0e-17 93.6 58 70.7
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.0e-17 93.6 66 60.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.0e-17 93.6 71 64.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.0e-17 93.6 60 68.3
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.0e-17 93.6 60 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.6e-17 93.2 66 63.6
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 7.7e-17 91.7 65 61.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.3e-16 90.9 50 74.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-16 90.9 65 63.1
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.7e-16 90.5 59 69.5
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.2e-16 90.1 98 46.9
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.2e-16 90.1 60 66.7
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.8e-16 89.4 60 65.0
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.8e-16 89.4 60 66.7
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.8e-16 89.4 60 66.7
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 5.0e-16 89.0 68 55.9
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.0e-16 89.0 56 69.6
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.9e-15 87.0 45 80.0
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.2e-15 86.3 49 73.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 3.2e-15 86.3 97 43.3
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.2e-15 85.9 65 58.5
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.2e-14 84.3 74 50.0
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 1.6e-14 84.0 77 48.1
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.7e-14 83.2 99 41.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.7e-14 83.2 48 70.8
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 4.6e-14 82.4 105 38.1
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.6e-14 82.4 67 56.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 6.1e-14 82.0 72 50.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.0e-13 79.7 54 61.1
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.0e-13 79.7 54 61.1
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.1e-12 77.8 63 54.0
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.5e-12 77.4 64 48.4
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.5e-12 77.4 54 63.0
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.5e-12 77.4 54 63.0
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.0e-12 77.0 69 50.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 4.4e-12 75.9 63 57.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.7e-11 73.9 40 75.0
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.8e-11 73.2 59 54.2
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.8e-11 73.2 59 54.2
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-10 71.2 43 62.8
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-10 70.5 65 53.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 9.1e-10 68.2 67 49.3
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 9.1e-10 68.2 67 49.3
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.6e-09 66.6 45 66.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-09 65.9 65 49.2
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 5.9e-09 65.5 65 49.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.7e-08 63.9 41 65.9


User provided reference genes

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