Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 7.5e-179 630.6 357 100.0
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 1.0e-127 460.7 357 69.7
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.4e-124 450.3 357 67.5
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.4e-124 449.5 357 67.2
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.5e-123 446.8 350 77.1
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 6.5e-122 441.4 356 68.3
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 8.5e-122 441.0 360 67.2
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.9e-121 439.9 357 68.3
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.9e-121 439.9 358 66.8
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 2.5e-121 439.5 314 82.2
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 4.2e-121 438.7 362 65.2
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 5.5e-121 438.3 357 66.4
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 7.2e-121 438.0 358 66.5
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.1e-120 436.4 359 67.1
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.7e-120 436.0 357 67.2
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 3.6e-120 435.6 359 65.7
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 6.1e-120 434.9 359 65.7
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.8e-119 433.3 348 68.4
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.3e-119 433.0 357 65.8
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.3e-119 433.0 364 65.1
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 3.0e-119 432.6 364 64.6
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 5.1e-119 431.8 358 65.9
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 5.1e-119 431.8 359 65.7
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 6.7e-119 431.4 358 65.6
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 6.7e-119 431.4 299 85.6
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 8.8e-119 431.0 361 72.3
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.5e-118 430.3 303 74.6
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.5e-118 430.3 303 74.6
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 2.0e-118 429.9 299 86.3
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.6e-118 429.5 299 86.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 3.3e-118 429.1 354 73.2
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 5.7e-118 428.3 307 72.6
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 5.7e-118 428.3 358 65.9
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 7.4e-118 427.9 336 67.9
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 7.4e-118 427.9 316 79.1
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.3e-117 427.2 370 64.1
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.3e-117 427.2 334 69.8
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.3e-117 427.2 357 66.9
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.7e-117 426.8 345 67.2
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.8e-117 426.0 359 65.2
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 4.8e-117 425.2 352 68.2
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 8.2e-117 424.5 354 73.4
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 8.2e-117 424.5 321 72.0
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 1.1e-116 424.1 303 73.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.4e-116 423.7 357 64.1
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 2.4e-116 422.9 361 65.7
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 4.1e-116 422.2 357 64.7
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.3e-116 421.8 357 64.1
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.1e-116 421.0 357 64.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.1e-116 421.0 291 77.3
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.2e-115 420.6 357 72.8
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.2e-115 420.6 328 76.5
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.2e-115 420.6 359 64.3
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.6e-115 419.5 348 73.3
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.6e-115 419.5 321 67.3
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.4e-115 419.1 310 71.6
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 3.4e-115 419.1 311 71.7
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 4.5e-115 418.7 319 71.5
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.0e-114 417.5 320 70.6
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.0e-114 417.5 353 71.4
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.3e-114 417.2 299 74.9
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.3e-114 417.2 359 63.0
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.2e-114 416.4 354 72.9
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.0e-114 415.2 354 72.9
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 6.5e-114 414.8 354 65.3
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 6.5e-114 414.8 354 72.6
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 6.5e-114 414.8 292 73.6
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.1e-113 414.1 354 72.9
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.9e-113 413.3 292 74.3
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 3.2e-113 412.5 313 69.3
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.2e-112 410.6 349 66.2
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.2e-112 410.6 325 67.7
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 1.2e-112 410.6 349 64.5
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 2.7e-112 409.5 353 72.0
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 7.9e-112 407.9 370 62.4
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.5e-110 403.7 319 67.7
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 2.6e-110 402.9 282 84.8
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 4.4e-110 402.1 319 68.0
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 5.7e-110 401.7 307 69.4
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 7.4e-110 401.4 293 70.3
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 9.7e-110 401.0 319 67.1
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 9.7e-110 401.0 293 71.3
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.3e-109 400.6 307 78.8
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.7e-109 400.2 317 67.2
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.7e-109 400.2 260 83.1
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 2.8e-109 399.4 352 61.6
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 3.7e-109 399.1 307 78.5
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.8e-109 398.7 299 79.9
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 6.3e-109 398.3 297 80.8
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 8.2e-109 397.9 310 69.7
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 8.2e-109 397.9 293 70.3
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.1e-108 397.5 293 70.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.1e-108 397.5 293 70.0
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.1e-108 397.5 293 70.0
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 2.4e-108 396.4 317 66.2
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 3.1e-108 396.0 347 63.4
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 3.1e-108 396.0 347 63.4
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 7.0e-108 394.8 347 63.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.2e-107 394.0 294 71.1
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.2e-107 394.0 350 62.6
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 3.5e-107 392.5 359 61.3
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.5e-105 386.3 316 68.4
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 3.2e-105 386.0 262 74.8
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 6.1e-104 381.7 354 69.2
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.3e-102 375.9 354 68.6
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.7e-101 373.6 242 81.8
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.7e-101 373.6 357 60.8
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 2.4e-100 369.8 257 73.2
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.6e-99 367.1 328 61.9
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 4.1e-92 342.4 294 61.9
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 7.0e-92 341.7 293 62.8
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 7.0e-92 341.7 258 69.8
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 1.2e-91 340.9 288 62.2
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.2e-91 340.9 259 69.5
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 7.7e-91 338.2 276 65.6
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.5e-89 334.0 317 56.8
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.8e-87 327.0 358 56.1
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 6.8e-87 325.1 343 52.2
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.5e-86 323.9 325 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 3.6e-80 302.8 245 66.1
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 2.3e-74 283.5 252 57.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 3.4e-70 269.6 256 54.3
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.7e-66 257.3 177 79.1
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 9.5e-65 251.5 148 87.2
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 6.4e-61 238.8 277 47.7
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 6.4e-53 212.2 304 46.1
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 5.4e-52 209.1 146 74.0
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-48 197.6 196 54.6
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 6.4e-45 185.7 103 92.2
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 3.2e-36 156.8 103 79.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 3.2e-36 156.8 103 79.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.8e-31 141.0 144 51.4
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.9e-28 131.0 83 71.1
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 3.8e-21 106.7 63 85.7
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.6e-11 73.6 44 75.0
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 8.2e-08 62.4 221 24.9
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.1e-07 60.5 227 26.4


User provided reference genes

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