Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 3624.3 1835 100.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2181.8 1871 61.1
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2113.6 1863 59.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 2062.7 1858 58.8
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 2046.2 1854 59.1
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2045.8 1843 59.4
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 2040.4 2070 53.9
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 2037.7 1860 58.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 2036.5 1858 57.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2028.4 1866 57.2
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1992.6 1877 57.0
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1982.6 1859 56.9
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1969.9 1850 56.5
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1968.4 1860 56.9
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1968.0 1888 56.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1947.9 1683 60.8
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1927.1 1757 58.2
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1912.5 1852 55.5
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1910.6 1853 55.2
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1907.5 1865 55.4
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1903.6 1852 54.8
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1899.8 1850 55.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1877.4 1866 54.3
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1871.7 1853 54.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1869.0 1853 53.9
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1868.2 1851 54.0
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1866.7 1868 54.1
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1862.8 1868 54.3
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1862.4 1851 53.9
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1857.4 1851 53.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1852.8 1863 54.2
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1835.8 1855 53.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1830.8 1917 52.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1829.7 1856 53.2
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1816.2 1830 54.2
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1808.9 1849 52.7
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1803.9 1864 52.4
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1803.1 1851 52.8
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1802.3 1859 52.8
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1799.3 1850 52.7
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1796.2 1524 61.7
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1788.1 1850 52.4
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1783.1 1763 53.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1779.2 1913 51.6
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1778.8 1764 55.2
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1778.5 1851 52.6
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1776.9 1834 52.8
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1776.1 1841 52.0
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1775.0 1852 52.4
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1770.0 1853 52.4
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1766.5 1855 52.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1761.1 1554 59.3
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1760.3 1942 51.8
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1755.3 1858 51.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1752.6 1850 52.2
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1750.3 1861 51.6
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1748.4 1849 52.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1742.6 1853 51.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1741.9 1855 51.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1737.2 1856 51.6
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1735.3 1883 51.0
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1732.2 1869 52.0
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1722.6 1853 51.3
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1717.2 1856 50.8
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1677.1 1856 49.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1653.6 1861 50.3
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1643.2 1850 49.8
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1640.2 1854 49.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1603.2 1543 55.3
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1602.0 1467 58.6
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1599.7 1672 52.8
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1561.2 1604 52.2
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1488.4 1864 46.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1470.3 1889 45.5
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1394.4 1136 63.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1380.9 1448 51.2
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1359.0 1435 51.1
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1335.1 1850 44.6
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1206.4 994 62.6
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1173.3 1049 60.3
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1156.0 1408 46.0
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1087.0 1369 46.7
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.0e-305 1051.6 954 58.8
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 7.8e-304 1048.1 1906 35.5
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.6e-285 986.1 1007 55.1
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.4e-273 947.6 1475 40.5
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 9.0e-268 928.3 796 62.6
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 8.4e-258 895.2 801 60.9
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.1e-241 841.6 925 49.6
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.2e-208 731.9 745 56.4
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.1e-196 692.2 514 71.0
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 5.8e-182 643.3 1515 31.3
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.5e-177 627.9 1371 32.8
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.4e-148 532.3 405 67.4
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.0e-146 526.2 478 61.1
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 2.1e-144 518.5 407 65.6
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.7e-138 496.5 406 66.3
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 4.5e-134 484.2 431 62.4
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 9.4e-132 476.5 570 45.1
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.6e-126 458.4 390 61.8
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.9e-123 446.8 631 41.7
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-117 428.7 332 68.1
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 5.7e-113 414.1 309 68.0
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 8.0e-107 393.7 551 40.1
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.2e-100 371.3 590 37.8
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 4.2e-100 371.3 311 65.0
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.8e-96 357.8 280 66.8
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.6e-91 341.7 476 42.6
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.5e-84 318.9 487 39.6
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.6e-83 315.1 367 47.7
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.8e-82 312.8 338 51.8
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.0e-81 309.3 501 38.7
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.4e-74 286.6 178 81.5
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.5e-73 283.1 178 79.8
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 9.8e-73 280.4 264 53.8
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 2.9e-72 278.9 406 41.6
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.7e-72 278.5 566 33.4
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.7e-70 272.3 214 65.0
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 2.3e-69 269.2 509 32.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 5.2e-66 258.1 373 39.1
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 2.5e-60 239.2 378 39.2
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.3e-56 226.9 178 61.2
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 6.6e-53 214.5 137 73.0
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.2e-51 210.3 398 34.9
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 6.9e-50 204.5 735 25.6
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-47 197.2 137 68.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 7.1e-47 194.5 961 23.5
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.6e-46 193.4 852 24.3
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.7e-46 192.6 182 57.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 6.0e-46 191.4 428 31.3
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 4.3e-44 185.3 105 82.9
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 4.8e-43 181.8 111 82.0
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.5e-36 159.5 153 57.5
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.3e-35 157.1 299 32.4
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-34 154.1 162 54.9
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 5.3e-34 151.8 207 39.6
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.5e-31 141.7 150 44.7
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.3e-28 132.5 141 49.6
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-26 127.5 85 69.4
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.1e-26 127.5 85 70.6
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.5e-25 123.6 180 42.2
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.5e-25 122.1 82 72.0
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 1.3e-24 120.6 157 43.3
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.3e-24 120.6 82 72.0
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.3e-24 120.6 127 52.8
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-24 120.2 78 75.6
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.9e-22 111.3 167 36.5
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.8e-21 110.2 74 68.9
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 8.7e-21 107.8 84 61.9
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.9e-20 106.7 82 64.6
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.6e-19 103.6 55 90.9
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.5e-17 95.5 174 36.8
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 7.2e-15 88.2 70 60.0
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 7.2e-15 88.2 70 60.0
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.6e-14 87.0 114 44.7
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 4.6e-14 85.5 118 38.1
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 4.6e-14 85.5 118 38.1
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.8e-13 83.6 57 73.7
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 3.9e-13 82.4 64 62.5
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 5.7e-12 78.6 109 39.4
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.8e-11 76.3 49 69.4
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.8e-11 76.3 49 69.4
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.8e-11 76.3 49 69.4
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.1e-10 74.3 57 68.4
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.1e-10 72.8 48 66.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 6.9e-10 71.6 169 30.2
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 2.2e-08 66.6 93 37.6
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 3.2e-07 62.8 80 40.0
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 3.2e-07 62.8 57 54.4
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 7.2e-07 61.6 63 49.2
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.6e-06 60.5 160 28.8
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 4.7e-06 58.9 69 40.6
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 6.1e-06 58.5 118 35.6
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 7.9e-06 58.2 76 39.5


User provided reference genes

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