Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.2e-242 840.9 407 100.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.7e-155 553.1 398 65.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.3e-154 548.9 398 64.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.2e-153 547.0 398 64.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.4e-149 533.5 395 63.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.1e-149 531.2 399 62.9
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 2.8e-145 519.2 394 61.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.2e-145 518.1 405 60.7
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 4.5e-143 511.9 394 60.2
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 4.5e-143 511.9 406 59.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-142 510.4 395 60.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.7e-142 510.0 406 59.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.9e-142 509.2 396 60.4
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.9e-142 509.2 396 60.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.9e-142 509.2 406 59.6
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.9e-142 509.2 406 59.6
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 3.8e-142 508.8 396 60.4
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 6.4e-142 508.1 406 58.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 8.4e-142 507.7 396 60.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 8.4e-142 507.7 396 60.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 8.4e-142 507.7 398 60.1
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.9e-141 506.5 405 59.5
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.9e-141 506.5 405 59.5
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.4e-141 506.1 397 61.0
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.2e-141 505.4 395 60.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 4.2e-141 505.4 394 59.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 9.3e-141 504.2 405 59.3
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.1e-140 503.1 403 58.6
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.5e-140 502.3 397 59.2
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.5e-140 502.3 396 59.3
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.0e-139 499.2 406 57.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.0e-139 499.2 400 58.8
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 5.1e-139 498.4 403 58.6
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-138 497.3 394 57.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.3e-138 495.7 395 58.5
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.1e-137 493.0 394 58.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.1e-137 493.0 403 59.1
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.1e-137 493.0 394 58.4
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.1e-137 493.0 394 57.6
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.8e-137 492.7 393 57.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.8e-137 491.9 396 58.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 4.8e-137 491.9 394 57.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 4.8e-137 491.9 398 57.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 6.2e-137 491.5 399 57.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 6.2e-137 491.5 394 58.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 8.1e-137 491.1 399 60.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-136 490.7 394 57.4
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.4e-136 490.3 403 56.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-136 490.3 401 58.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.8e-136 490.0 395 58.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.4e-136 489.6 394 58.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.1e-136 489.2 394 57.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 3.1e-136 489.2 403 57.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.3e-136 488.4 395 59.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.9e-136 488.0 413 55.0
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 6.9e-136 488.0 395 59.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 6.9e-136 488.0 395 58.0
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.9e-136 488.0 392 57.4
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-135 487.3 394 57.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-135 487.3 394 57.6
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-135 487.3 394 57.6
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.5e-135 486.9 395 58.5
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 5.8e-135 485.0 393 58.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-134 483.4 387 58.4
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.9e-134 481.9 396 56.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.9e-134 481.9 394 57.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.4e-134 481.5 395 58.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 6.4e-134 481.5 396 57.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.1e-133 480.7 394 58.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.9e-133 479.9 388 58.0
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.2e-133 479.2 386 56.5
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.2e-133 478.8 395 56.2
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.2e-133 478.8 394 58.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.2e-133 478.8 403 56.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.2e-133 478.8 388 57.7
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.3e-133 477.6 395 58.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.6e-132 476.9 387 58.1
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.7e-132 476.1 396 56.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 4.6e-132 475.3 384 57.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 7.9e-132 474.6 396 54.5
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.0e-131 474.2 394 58.4
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-131 473.8 403 54.8
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-131 473.8 405 56.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.5e-130 470.3 404 54.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.3e-129 467.2 403 53.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.6e-129 466.8 398 54.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.6e-129 466.8 385 58.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 2.1e-129 466.5 401 54.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 2.1e-129 466.5 396 56.1
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 2.8e-129 466.1 393 57.5
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.8e-129 466.1 394 54.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 6.2e-129 464.9 398 54.5
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 6.2e-129 464.9 403 53.3
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.8e-128 463.4 405 53.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-127 460.3 395 56.2
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.5e-127 460.3 396 56.1
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.4e-127 459.1 390 55.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.4e-127 459.1 390 55.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.4e-127 459.1 387 54.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.0e-126 457.6 385 54.5
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.5e-126 454.9 384 55.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-125 453.4 403 54.1
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.2e-125 452.6 383 55.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.6e-124 450.3 387 53.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.7e-124 449.5 407 53.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.6e-124 448.7 387 53.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.8e-121 439.5 408 52.5
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-120 436.8 407 51.4
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.0e-120 434.5 384 51.8
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 3.4e-119 432.6 383 52.2
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.0e-118 431.0 402 53.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.8e-118 429.1 383 52.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 5.0e-118 428.7 408 51.0
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-117 427.2 393 51.4
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.7e-116 422.9 397 53.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.6e-116 422.5 411 51.3
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.6e-116 422.2 374 53.5
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.6e-116 422.2 374 53.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.1e-112 409.1 412 48.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 4.1e-112 409.1 403 51.1
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.9e-111 405.2 385 47.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.4e-109 400.6 398 50.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.0e-107 394.4 406 48.3
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.1e-107 392.1 406 48.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-106 390.2 399 50.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.7e-106 388.7 378 51.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.0e-103 380.2 392 46.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.3e-99 366.7 392 48.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.8e-96 357.1 404 45.3
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.6e-95 354.0 407 47.2
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.1e-93 347.8 405 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.5e-87 325.9 394 43.7
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.5e-87 325.9 406 41.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 4.4e-74 282.7 247 53.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 2.4e-72 276.9 391 41.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.3e-70 271.2 394 39.6
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.1e-69 268.1 403 38.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.8e-67 260.8 394 38.6
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.4e-64 250.4 395 38.0
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.9e-62 243.0 394 37.8
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.6e-62 241.9 296 42.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-60 236.9 184 55.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 8.9e-59 231.9 438 34.2
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-56 224.9 228 50.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.4e-48 197.2 158 53.8
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-37 161.0 156 51.3
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.6e-34 150.6 391 28.4
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.0e-30 137.1 114 51.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-28 131.3 320 27.8
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.3e-25 121.7 111 55.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.9e-21 107.8 82 58.5
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.3e-12 78.6 404 24.8
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.8e-09 67.0 41 70.7
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.6e-07 60.1 411 25.3


User provided reference genes

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