Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006080 Simmondsia chinensis HOM05D000172 ORTHO05D000273 1.3e-61 239.6 125 100.0
Sc07g0006000 Simmondsia chinensis HOM05D000172 ORTHO05D000273 4.4e-57 224.6 117 100.0
AUR62006458 Chenopodium quinoa HOM05D000172 ORTHO05D000273 4.4e-25 118.2 116 56.0
AUR62029814 Chenopodium quinoa HOM05D000172 ORTHO05D000273 4.4e-25 118.2 116 56.0
MBI03_g16539_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 3.5e-22 108.6 113 54.0
Sabra04G0158400 Salix brachista HOM05D000172 ORTHO05D000273 6.0e-22 107.8 101 58.4
EL10Ac7g17145 Beta vulgaris HOM05D000172 ORTHO05D000273 7.8e-22 107.5 97 56.7
Potri.016G142200 Populus trichocarpa HOM05D000172 ORTHO05D000273 3.3e-20 102.1 94 56.4
Prupe.6G299100 Prunus persica HOM05D000172 ORTHO05D000273 3.3e-20 102.1 104 53.8
Nn5g26756 Nelumbo nucifera HOM05D000172 ORTHO05D000273 5.6e-20 101.3 104 53.8
FAN05G2356 Fragaria x ananassa HOM05D000172 ORTHO05D000273 7.3e-20 100.9 102 53.9
FvH4_6g09280 Fragaria vesca HOM05D000172 ORTHO05D000273 9.5e-20 100.5 102 53.9
FAN09G0841 Fragaria x ananassa HOM05D000172 ORTHO05D000273 9.5e-20 100.5 102 52.9
Eucgr.K01310 Eucalyptus grandis HOM05D000172 ORTHO05D000273 2.1e-19 99.4 107 48.6
FAN14G3495 Fragaria x ananassa HOM05D000172 ORTHO05D000273 2.8e-19 99.0 102 52.9
MD12G1194400 Malus domestica HOM05D000172 ORTHO05D000273 4.7e-19 98.2 102 52.0
TAR636G2946 Trochodendron aralioides HOM05D000172 ORTHO05D000273 4.0e-18 95.1 109 49.5
Ah.06g188010 Amaranthus hybridus HOM05D000172 ORTHO05D000273 6.8e-18 94.4 121 45.5
GSVIVG01029849001 Vitis vinifera HOM05D000172 ORTHO05D000273 8.9e-18 94.0 96 49.0
Potri.006G112700 Populus trichocarpa HOM05D000172 ORTHO05D000273 1.5e-17 93.2 74 59.5
TWI74G1663 Tripterygium wilfordii HOM05D000172 ORTHO05D000273 4.4e-17 91.7 105 47.6
ATR1127G037 Amborella trichopoda HOM05D000172 ORTHO05D000273 9.8e-17 90.5 118 48.3
RcHm_v2.0_Chr3g0459661 Rosa chinensis HOM05D000172 ORTHO05D000273 1.7e-16 89.7 73 63.0
MD04G1179300 Malus domestica HOM05D000172 ORTHO05D000273 2.9e-16 89.0 91 51.6
PSO384G2764 Papaver somniferum HOM05D000172 ORTHO05D000273 3.7e-16 88.6 72 56.9
Cfa016990 Carpinus fangiana HOM05D000172 ORTHO05D000273 1.9e-15 86.3 75 58.7
Lj1g0007760 Lotus japonicus HOM05D000172 ORTHO05D000273 1.9e-15 86.3 80 52.5
QL07p030579 Quercus lobata HOM05D000172 ORTHO05D000273 4.1e-15 85.1 70 58.6
QL07p031468 Quercus lobata HOM05D000172 ORTHO05D000273 4.1e-15 85.1 70 58.6
Manes.09G120500 Manihot esculenta HOM05D000172 ORTHO05D000273 5.4e-15 84.7 74 56.8
Medtr7g074250 Medicago truncatula HOM05D000172 ORTHO05D000273 1.2e-14 83.6 113 40.7
Haze_21215 Corylus avellana HOM05D000172 ORTHO05D000273 1.6e-14 83.2 77 54.5
Thecc.04G001300 Theobroma cacao HOM05D000172 ORTHO05D000273 1.6e-14 83.2 97 45.4
Cpa.g.sc60.58 Carica papaya HOM05D000172 ORTHO05D000273 2.7e-14 82.4 70 52.9
Ciclev10012748m.g Citrus clementina HOM05D000172 ORTHO05D000273 2.7e-14 82.4 73 58.9
PGR004G0213 Punica granatum HOM05D000172 ORTHO05D000273 2.7e-14 82.4 100 47.0
Phvul.008G078400 Phaseolus vulgaris HOM05D000172 ORTHO05D000273 6.0e-14 81.3 75 50.7
VMungo1383G1980 Vigna mungo HOM05D000172 ORTHO05D000273 7.8e-14 80.9 75 52.0
Lalb_Chr01g0024011 Lupinus albus HOM05D000172 ORTHO05D000273 2.3e-13 79.3 94 42.6
Dinv25376 Davidia involucrata HOM05D000172 ORTHO05D000273 3.0e-13 79.0 99 45.5
Glyma.18G218700 Glycine max HOM05D000172 ORTHO05D000273 1.1e-12 77.0 74 50.0
CANSAT80G1389 Cannabis sativa HOM05D000172 ORTHO05D000273 3.3e-12 75.5 74 51.4
Manes.08G167200 Manihot esculenta HOM05D000172 ORTHO05D000273 5.6e-12 74.7 109 43.1
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.6e-11 73.2 100 41.0
CDE12G0795 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 3.6e-11 72.0 70 48.6
Sp3g04910 Schrenkiella parvula HOM05D000172 ORTHO05D000273 6.2e-11 71.2 100 45.0
Thhalv10022344m.g Eutrema salsugineum HOM05D000172 ORTHO05D000273 1.1e-10 70.5 98 43.9
TPR.G24308 Trifolium pratense HOM05D000172 ORTHO05D000273 1.8e-10 69.7 113 37.2
Carub.0003s0538 Capsella rubella HOM05D000172 ORTHO05D000273 3.1e-10 68.9 96 41.7
CiPaw.09G225200 Carya illinoinensis HOM05D000172 ORTHO05D000273 4.0e-10 68.6 68 52.9
C05p61290 Brassica napus HOM05D000172 ORTHO05D000273 8.9e-10 67.4 98 44.9
BolC5t34788H Brassica oleracea HOM05D000172 ORTHO05D000273 8.9e-10 67.4 98 44.9
BraA05t22926Z Brassica rapa HOM05D000172 ORTHO05D000273 8.9e-10 67.4 98 44.9
BcaC05g30073 Brassica carinata HOM05D000172 ORTHO05D000273 1.2e-09 67.0 98 44.9
Aqoxy2G00683 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 2.6e-09 65.9 69 50.7
A05p42060 Brassica napus HOM05D000172 ORTHO05D000273 2.6e-09 65.9 98 43.9
HPP92_003274 Vanilla planifolia HOM05D000172 ORTHO05D000273 2.6e-09 65.9 97 44.3
HPP92_019041 Vanilla planifolia HOM05D000172 ORTHO05D000273 4.4e-09 65.1 74 45.9
Prupe.6G299500 Prunus persica HOM05D000172 ORTHO05D000273 5.8e-09 64.7 96 39.6
Ciclev10012736m.g Citrus clementina HOM05D000172 ORTHO05D000273 9.9e-09 63.9 110 36.4
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 9.9e-09 63.9 73 42.5
CARHR080480 Cardamine hirsuta HOM05D000172 ORTHO05D000273 1.7e-08 63.2 98 41.8
Os06g0521300 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 3.7e-08 62.0 105 42.9
ATR0697G067 Amborella trichopoda HOM05D000172 ORTHO05D000273 4.9e-08 61.6 100 41.0
BraA01t04458Z Brassica rapa HOM05D000172 ORTHO05D000273 4.9e-08 61.6 93 41.9
Duzib268G1393 Durio zibethinus HOM05D000172 ORTHO05D000273 6.4e-08 61.2 124 35.5
MSTRG.18924 Avicennia marina HOM05D000172 ORTHO05D000273 8.3e-08 60.8 101 40.6
AUR62006457 Chenopodium quinoa HOM05D000172 ORTHO05D000273 8.3e-08 60.8 102 42.2
Zm00001eb093800 Zea mays HOM05D000172 ORTHO05D000273 8.3e-08 60.8 75 45.3
Aqoxy2G00681 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 1.1e-07 60.5 77 46.8
Lj1g0012509 Lotus japonicus HOM05D000172 ORTHO05D000273 1.1e-07 60.5 84 36.9
Lj3g0005630 Lotus japonicus HOM05D000172 ORTHO05D000273 1.1e-07 60.5 91 41.8
AUR62029813 Chenopodium quinoa HOM05D000172 ORTHO05D000273 1.4e-07 60.1 102 44.1
BcaC09g47868 Brassica carinata HOM05D000172 ORTHO05D000273 1.9e-07 59.7 86 41.9
BolC1t05646H Brassica oleracea HOM05D000172 ORTHO05D000273 1.9e-07 59.7 86 41.9
Cc06_g00110 Coffea canephora HOM05D000172 ORTHO05D000273 1.9e-07 59.7 104 37.5
Glyma.01G239100 Glycine max HOM05D000172 ORTHO05D000273 1.9e-07 59.7 70 44.3
Os11g0120100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 1.9e-07 59.7 80 46.2
SGA_v2.0_scaffold373G50204 Striga asiatica HOM05D000172 ORTHO05D000273 1.9e-07 59.7 75 48.0
THA.LOC104806281 Tarenaya hassleriana HOM05D000172 ORTHO05D000273 1.9e-07 59.7 101 35.6
Peaxi162Scf00548g00065 Petunia axillaris HOM05D000172 ORTHO05D000273 2.4e-07 59.3 110 33.6
RcHm_v2.0_Chr2g0159481 Rosa chinensis HOM05D000172 ORTHO05D000273 2.4e-07 59.3 101 38.6
MBI18_g03011_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 3.2e-07 58.9 89 41.6
Os12g0119800 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 3.2e-07 58.9 80 46.2
RcHm_v2.0_Chr2g0159781 Rosa chinensis HOM05D000172 ORTHO05D000273 3.2e-07 58.9 89 39.3
Thecc.06G215600 Theobroma cacao HOM05D000172 ORTHO05D000273 3.2e-07 58.9 90 37.8
HanXRQChr16g0507131 Helianthus annuus HOM05D000172 ORTHO05D000273 5.4e-07 58.2 96 39.6
MBI03_g34204_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 5.4e-07 58.2 99 44.4
Aa31sc488G30 Aethionema arabicum HOM05D000172 ORTHO05D000273 7.1e-07 57.8 97 35.1
CAN.G921.16 Capsicum annuum HOM05D000172 ORTHO05D000273 7.1e-07 57.8 105 39.0
Manes.09G120400 Manihot esculenta HOM05D000172 ORTHO05D000273 7.1e-07 57.8 73 42.5
Pp3c9_12490 Physcomitrium patens HOM05D000172 ORTHO05D000273 7.1e-07 57.8 102 36.3
AT3G05975 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 9.2e-07 57.4 96 35.4
FAN14G1279 Fragaria x ananassa HOM05D000172 ORTHO05D000273 9.2e-07 57.4 95 40.0
FAN14G4639 Fragaria x ananassa HOM05D000172 ORTHO05D000273 9.2e-07 57.4 95 40.0
Lsat_1_v5_gn_5_153681 Lactuca sativa HOM05D000172 ORTHO05D000273 9.2e-07 57.4 94 35.1
Nitab4.5_0000142g0050 Nicotiana tabacum HOM05D000172 ORTHO05D000273 9.2e-07 57.4 110 31.8
Oeu026920.1 Olea europaea HOM05D000172 ORTHO05D000273 9.2e-07 57.4 102 37.3
FAN05G5678 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.2e-06 57.0 95 38.9
AT3G54200 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 1.6e-06 56.6 74 43.2
MD12G1194600 Malus domestica HOM05D000172 ORTHO05D000273 1.6e-06 56.6 109 38.5
Rhsim06G0159600 Rhododendron simsii HOM05D000172 ORTHO05D000273 1.6e-06 56.6 81 39.5
RhsimUnG0011000 Rhododendron simsii HOM05D000172 ORTHO05D000273 1.6e-06 56.6 81 39.5
Lsat_1_v5_gn_9_40000 Lactuca sativa HOM05D000172 ORTHO05D000273 2.1e-06 56.2 99 35.4
Nitab4.5_0000274g0190 Nicotiana tabacum HOM05D000172 ORTHO05D000273 2.1e-06 56.2 113 35.4
AL5G35240 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 2.7e-06 55.8 73 42.5
Duzib235G1464 Durio zibethinus HOM05D000172 ORTHO05D000273 2.7e-06 55.8 93 37.6
Glyma.03G000800 Glycine max HOM05D000172 ORTHO05D000273 2.7e-06 55.8 92 40.2
Psat2g191160 Pisum sativum HOM05D000172 ORTHO05D000273 2.7e-06 55.8 89 40.4
SalBow8G2350 Salvia bowleyana HOM05D000172 ORTHO05D000273 2.7e-06 55.8 90 36.7
Solyc02g092400.1 Solanum lycopersicum HOM05D000172 ORTHO05D000273 2.7e-06 55.8 110 31.8
Aa31LG11G12460 Aethionema arabicum HOM05D000172 ORTHO05D000273 3.5e-06 55.5 100 31.0
FAN09G2317 Fragaria x ananassa HOM05D000172 ORTHO05D000273 3.5e-06 55.5 95 40.0
PSO421G0195 Papaver somniferum HOM05D000172 ORTHO05D000273 3.5e-06 55.5 116 40.5
PGSC0003DMG400020863 Solanum tuberosum HOM05D000172 ORTHO05D000273 3.5e-06 55.5 96 39.6
Aqoxy2G02095 Aquilegia oxysepala HOM05D000172 ORTHO05D000273 4.6e-06 55.1 107 36.4
arahy.Tifrunner.gnm1.ann1.GQ7PCB Arachis hypogaea HOM05D000172 ORTHO05D000273 4.6e-06 55.1 91 38.5
arahy.Tifrunner.gnm1.ann1.K3DWLG Arachis hypogaea HOM05D000172 ORTHO05D000273 4.6e-06 55.1 91 38.5
Glyma.13G000500 Glycine max HOM05D000172 ORTHO05D000273 4.6e-06 55.1 92 40.2
Lj1g0026304 Lotus japonicus HOM05D000172 ORTHO05D000273 4.6e-06 55.1 103 37.9
Nitab4.5_0002119g0090 Nicotiana tabacum HOM05D000172 ORTHO05D000273 4.6e-06 55.1 110 30.9
Atru.chr10.2158 Acer truncatum HOM05D000172 ORTHO05D000273 6.0e-06 54.7 95 33.7
MSTRG.6963 Avicennia marina HOM05D000172 ORTHO05D000273 6.0e-06 54.7 78 39.7
BcaC07g39762 Brassica carinata HOM05D000172 ORTHO05D000273 6.0e-06 54.7 78 37.2
C08p29460 Brassica napus HOM05D000172 ORTHO05D000273 6.0e-06 54.7 78 37.2
BolC8t50548H Brassica oleracea HOM05D000172 ORTHO05D000273 6.0e-06 54.7 78 37.2
CiPaw.04G114700 Carya illinoinensis HOM05D000172 ORTHO05D000273 6.0e-06 54.7 115 33.9
Nitab4.5_0002298g0020 Nicotiana tabacum HOM05D000172 ORTHO05D000273 6.0e-06 54.7 113 36.3
RcHm_v2.0_Chr7g0194471 Rosa chinensis HOM05D003645 ORTHO05D004395 6.0e-06 54.7 103 34.0
Sabra06G0087800 Salix brachista HOM05D000172 ORTHO05D000273 6.0e-06 54.7 112 34.8
Solyc09g031920.1 Solanum lycopersicum HOM05D000172 ORTHO05D000273 6.0e-06 54.7 108 37.0
Sopen02g036950 Solanum pennellii HOM05D000172 ORTHO05D000273 6.0e-06 54.7 110 31.8
TAR383G0265 Trochodendron aralioides HOM05D000172 ORTHO05D000273 6.0e-06 54.7 89 38.2
TAR626G0491 Trochodendron aralioides HOM05D000172 ORTHO05D000273 6.0e-06 54.7 89 38.2
vmacro20026 Vaccinium macrocarpon HOM05D000172 ORTHO05D000273 6.0e-06 54.7 80 43.8
AL3G16780 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 7.8e-06 54.3 76 38.2
Glyma.16G221900 Glycine max HOM05D000172 ORTHO05D000273 7.8e-06 54.3 91 37.4
Lalb_Chr13g0290311 Lupinus albus HOM05D000172 ORTHO05D000273 7.8e-06 54.3 91 38.5
MD04G1179500 Malus domestica HOM05D000172 ORTHO05D000273 7.8e-06 54.3 110 36.4
TPR.G30721 Trifolium pratense HOM05D000172 ORTHO05D000273 7.8e-06 54.3 91 37.4
VMungo1383G0075 Vigna mungo HOM05D000172 ORTHO05D000273 7.8e-06 54.3 91 39.6


User provided reference genes

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