Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 0.0e+00 1713.4 853 100.0
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 2.4e-263 912.5 873 54.6
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 8.2e-256 887.5 901 52.8
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 8.8e-250 867.5 862 52.3
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.2e-246 857.1 866 52.3
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.5e-246 856.7 865 52.6
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.0e-246 856.3 866 52.2
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 2.1e-243 846.3 857 51.9
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 2.2e-240 836.3 865 52.8
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 1.5e-238 830.1 859 51.3
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 1.4e-236 823.5 866 51.8
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 2.2e-232 809.7 869 49.8
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 1.4e-231 807.0 859 49.8
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 7.0e-231 804.7 867 49.8
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 1.2e-230 803.9 866 49.1
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.6e-230 803.5 867 49.4
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 3.5e-230 802.4 868 49.8
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 1.6e-227 793.5 867 48.1
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 3.6e-227 792.3 867 48.3
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 3.6e-227 792.3 866 48.6
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 8.8e-226 787.7 810 52.2
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 5.7e-225 785.0 855 49.8
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 3.7e-224 782.3 937 46.6
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 7.0e-223 778.1 860 49.5
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 8.5e-221 771.2 862 48.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 6.1e-219 765.0 853 48.9
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 8.0e-219 764.6 860 49.0
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 2.3e-218 763.1 860 47.0
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 2.0e-217 760.0 875 48.5
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 2.8e-216 756.1 862 47.9
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 8.3e-216 754.6 889 46.2
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 9.1e-215 751.1 776 51.3
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 2.3e-213 746.5 895 45.8
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 2.3e-213 746.5 860 47.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 8.6e-213 744.6 818 49.9
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 2.3e-210 736.5 834 48.6
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.8e-207 726.9 886 46.6
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 5.6e-204 715.3 654 57.3
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 8.0e-203 711.4 740 50.9
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 5.2e-202 708.8 858 46.0
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.5e-201 707.2 922 45.6
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 3.4e-201 706.1 844 45.6
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 2.0e-198 696.8 858 46.2
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 2.7e-198 696.4 860 44.8
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.3e-197 694.1 861 44.6
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 7.3e-196 688.3 852 45.8
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 1.4e-194 684.1 906 43.3
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 6.8e-194 681.8 864 44.2
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 6.8e-194 681.8 861 44.1
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.4e-191 674.1 950 44.1
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.4e-191 674.1 814 46.8
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 5.4e-191 672.2 854 45.0
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.7e-190 669.8 843 45.9
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 8.6e-189 664.8 803 46.6
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 2.5e-188 663.3 817 46.4
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 4.3e-188 662.5 895 42.5
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 6.2e-187 658.7 864 44.4
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 1.1e-180 637.9 675 49.8
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.6e-179 634.0 746 46.6
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 4.7e-179 632.5 893 42.8
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 4.4e-177 625.9 848 43.6
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.6e-174 617.5 752 46.8
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.3e-171 607.8 661 48.6
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 6.6e-165 585.5 708 46.8
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 7.3e-164 582.0 849 39.7
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 5.8e-161 572.4 483 59.4
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 3.2e-159 566.6 670 46.7
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 6.7e-157 558.9 643 49.1
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 1.1e-156 558.1 863 39.7
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 3.3e-156 556.6 869 39.0
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 3.2e-151 540.0 866 37.9
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 7.4e-140 502.3 546 50.9
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 8.5e-128 462.2 786 37.9
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 2.1e-126 457.6 423 56.7
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 4.1e-122 443.4 478 50.4
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 2.6e-113 414.1 344 58.7
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.2e-101 373.2 290 61.7
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 1.8e-93 348.2 626 36.3
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 3.3e-87 327.4 381 50.7
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 8.3e-83 312.8 805 31.4
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 6.0e-73 280.0 844 28.4
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 3.3e-71 274.2 308 48.7
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 1.1e-66 259.2 390 40.8
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.3e-64 252.3 250 51.6
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 3.3e-63 247.7 324 45.1
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 6.8e-61 240.0 854 26.2
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 3.4e-60 237.7 814 28.4
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.9e-55 221.9 650 28.9
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 7.3e-55 219.9 322 41.9
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.4e-53 215.7 171 62.0
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 3.4e-52 211.1 170 60.0
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 3.8e-51 207.6 303 39.9
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 6.6e-48 196.8 196 54.6
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 6.4e-43 180.3 205 47.8
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 8.7e-40 169.9 221 43.9
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 6.2e-38 163.7 95 76.8
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 2.1e-33 148.7 126 57.1
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 7.9e-33 146.7 122 59.8
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.7e-32 143.7 140 50.0
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 9.0e-29 133.3 194 42.3
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 7.6e-28 130.2 157 43.9
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 7.6e-28 130.2 262 35.5
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 9.3e-26 123.2 176 47.7
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 4.6e-25 120.9 138 43.5
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.3e-24 119.4 96 57.3
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.0e-19 103.2 101 48.5
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 2.5e-18 98.6 76 61.8
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 5.5e-18 97.4 85 55.3
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.3e-16 92.0 56 69.6
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.0e-16 91.7 87 50.6
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.4e-13 82.8 106 39.6
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 5.5e-10 70.9 56 55.4
Sopen03g008260 Solanum pennellii HOM05D001905 ORTHO05D001820 5.1e-08 64.3 398 22.6
Glyma.17G167800 Glycine max HOM05D001905 ORTHO05D001820 1.1e-07 63.2 381 23.1
Solyc03g044220.1 Solanum lycopersicum HOM05D001905 ORTHO05D001820 1.1e-07 63.2 396 22.7
PGSC0003DMG400020918 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.0e-07 62.4 395 24.1
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 7.4e-07 60.5 65 46.2
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.7e-06 59.3 208 26.9
Medtr6g027420 Medicago truncatula HOM05D001219 ORTHO05D001017 2.8e-06 58.5 233 27.0
TWI60G1191 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 2.8e-06 58.5 424 22.4
TPR.G18060 Trifolium pratense HOM05D001219 ORTHO05D001017 6.3e-06 57.4 198 26.3


User provided reference genes

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