Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.9e-212 742.3 385 100.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 8.2e-163 577.4 383 77.5
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.4e-161 572.0 381 77.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.0e-160 568.2 383 76.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 6.5e-160 567.8 383 76.5
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.7e-158 562.4 384 76.0
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 4.6e-158 561.6 383 75.2
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 6.1e-158 561.2 378 75.9
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 8.7e-157 557.4 383 74.2
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.5e-156 555.8 383 74.2
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.7e-156 554.7 383 74.4
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 9.7e-156 553.9 383 74.9
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.8e-155 552.4 383 73.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-155 552.4 384 73.7
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.7e-155 552.0 383 76.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.7e-155 552.0 383 74.2
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.7e-155 552.0 383 73.6
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.7e-155 552.0 378 75.7
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.2e-155 550.8 383 74.4
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.1e-154 550.4 383 73.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-154 549.7 383 73.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.1e-154 548.5 384 74.2
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.1e-154 548.5 383 73.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 4.1e-154 548.5 383 74.2
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 5.3e-154 548.1 383 73.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 6.9e-154 547.7 383 73.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.6e-153 545.8 383 73.9
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.4e-153 545.4 383 73.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.0e-152 543.9 383 73.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.0e-152 543.9 378 74.6
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.7e-152 543.1 383 72.3
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.2e-152 542.7 383 70.8
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.9e-151 539.7 385 72.7
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.5e-151 538.1 383 72.1
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 5.5e-151 538.1 383 71.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.6e-150 536.6 384 72.9
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.1e-150 536.2 380 71.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.6e-150 535.0 385 71.4
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 6.1e-150 534.6 381 72.7
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.0e-149 533.9 383 71.3
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.0e-149 533.9 383 70.5
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.4e-149 533.5 378 73.3
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.1e-148 530.4 383 71.8
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-148 530.4 383 71.3
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.5e-148 530.0 383 70.5
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 4.4e-148 528.5 384 70.6
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 5.7e-148 528.1 380 71.3
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-147 526.6 383 71.3
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.2e-147 526.2 392 70.2
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.2e-147 526.2 378 72.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.8e-147 525.8 385 72.2
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.1e-146 523.9 383 71.3
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 4.1e-146 521.9 381 72.2
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 4.1e-146 521.9 385 69.9
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.6e-145 519.2 383 71.0
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.4e-145 518.8 381 70.6
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 4.5e-145 518.5 385 70.6
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 4.5e-145 518.5 385 69.1
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.0e-144 517.3 383 68.4
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.9e-144 515.8 380 69.5
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.8e-144 515.4 380 69.5
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.4e-143 513.5 383 70.8
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-143 513.1 383 67.9
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.2e-143 512.3 383 68.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 4.2e-143 511.9 383 70.0
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.6e-142 510.0 380 68.9
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.3e-141 506.1 385 67.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.0e-141 505.8 380 71.3
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.9e-141 505.4 383 67.1
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 8.8e-141 504.2 383 71.3
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.7e-140 500.7 387 67.4
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 3.7e-139 498.8 383 66.6
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.1e-138 497.3 381 66.7
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 5.3e-138 495.0 383 66.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-137 493.8 383 67.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.6e-137 493.4 415 64.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.5e-137 492.3 383 65.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 3.5e-137 492.3 385 66.5
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.0e-136 490.7 380 66.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.5e-136 487.6 422 62.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 4.2e-135 485.3 376 69.1
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 4.2e-135 485.3 383 66.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 7.2e-135 484.6 386 67.1
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 2.7e-134 482.6 389 68.4
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.0e-133 479.2 378 68.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.0e-132 476.5 382 63.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.8e-131 471.9 383 65.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.1e-130 470.7 416 62.5
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.4e-130 470.3 386 63.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.3e-130 468.4 383 64.8
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 5.9e-129 464.9 380 64.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 5.9e-129 464.9 383 64.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 7.7e-129 464.5 383 65.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.3e-128 463.8 383 63.7
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-128 463.8 378 65.6
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.0e-128 461.8 383 63.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 5.0e-128 461.8 383 63.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-127 460.7 384 63.5
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.1e-127 460.7 384 63.5
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.1e-127 460.7 378 66.7
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 4.2e-127 458.8 384 63.3
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.4e-127 457.6 386 61.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.0e-125 454.1 388 65.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 3.4e-124 449.1 383 62.4
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-124 448.7 383 62.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-122 443.7 383 61.6
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 3.1e-122 442.6 383 61.4
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 7.0e-122 441.4 383 61.4
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.7e-121 439.5 383 60.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.7e-121 439.5 383 60.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 7.7e-121 438.0 383 60.6
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 5.0e-120 435.3 383 60.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 5.5e-119 431.8 383 60.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-118 430.6 383 59.5
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.2e-118 430.6 282 77.0
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.1e-118 429.9 316 69.9
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 4.0e-117 425.6 395 60.0
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 5.2e-117 425.2 341 65.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.6e-116 422.9 386 57.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.8e-115 419.5 386 55.7
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.9e-115 418.7 380 60.3
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-114 417.5 381 59.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.8e-114 416.8 271 77.1
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 5.4e-114 415.2 344 64.0
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.2e-110 404.1 410 53.2
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.8e-109 400.2 383 54.0
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.0e-108 396.7 381 58.5
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.2e-102 377.5 324 61.4
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.7e-102 375.6 284 66.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.3e-101 373.2 384 51.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.5e-84 317.4 199 80.9
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.6e-84 315.1 371 52.6
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.9e-83 313.2 200 80.5
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.3e-79 299.3 315 54.6
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-75 287.7 313 53.4
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 9.0e-69 265.0 364 43.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.9e-66 257.3 214 64.0
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 3.2e-58 229.9 180 68.9
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.8e-54 216.1 408 34.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 4.3e-47 193.0 142 65.5
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-46 190.7 283 44.2
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 7.6e-44 182.2 355 39.2
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.0e-40 170.2 286 41.3
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.9e-40 169.9 252 42.9
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.1e-37 159.8 151 59.6
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.3e-31 140.2 151 53.6
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 8.2e-30 135.6 154 48.7
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.0e-28 131.0 283 31.4
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.2e-26 122.5 122 54.1
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.0e-21 105.9 125 44.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.9e-19 100.5 76 63.2
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.9e-19 100.5 76 63.2
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 6.7e-16 89.4 305 23.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.2e-14 84.3 48 87.5
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-13 82.0 62 72.6
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.5e-12 77.0 63 63.5
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-11 74.3 46 80.4
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.4e-10 68.9 53 69.8
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.0e-09 65.9 62 51.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-07 62.0 60 53.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.6e-07 60.8 75 48.0
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.4e-07 60.5 47 61.7
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.2e-06 57.8 48 58.3
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 2.8e-06 57.4 48 58.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.8e-06 56.6 257 27.2


User provided reference genes

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