Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003920 Simmondsia chinensis HOM05D001780 ORTHO05D005322 5.1e-128 461.1 229 100.0
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 5.9e-44 181.8 93 94.6
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 3.4e-39 166.0 90 87.8
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 4.4e-39 165.6 97 83.5
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 5.8e-39 165.2 90 86.7
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 3.7e-38 162.5 90 86.7
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 4.9e-38 162.2 90 85.6
AL8G22400 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
BcaB07g34212 Brassica carinata HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 6.4e-38 161.8 90 84.4
Lj6A675T27 Lonicera japonica HOM05D001780 ORTHO05D005322 8.3e-38 161.4 90 83.3
Lj6A676G60 Lonicera japonica HOM05D001780 ORTHO05D005322 8.3e-38 161.4 90 83.3
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 1.1e-37 161.0 90 83.3
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 1.1e-37 161.0 90 83.3
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 1.1e-37 161.0 88 87.5
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 1.4e-37 160.6 90 86.7
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.4e-37 160.6 104 76.0
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 2.4e-37 159.8 90 83.3
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 2.4e-37 159.8 97 79.4
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 4.1e-37 159.1 90 83.3
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 5.4e-37 158.7 97 77.3
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 5.4e-37 158.7 90 85.6
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 7.0e-37 158.3 90 83.3
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 7.0e-37 158.3 90 83.3
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 7.0e-37 158.3 90 84.4
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 9.2e-37 157.9 90 82.2
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 9.2e-37 157.9 90 84.4
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 9.2e-37 157.9 97 78.4
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 9.2e-37 157.9 97 78.4
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 9.2e-37 157.9 90 82.2
Eucgr.H03911 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.2e-36 157.5 90 82.2
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 1.6e-36 157.1 90 83.3
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 2.0e-36 156.8 90 82.2
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.0e-36 156.8 90 81.1
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 2.0e-36 156.8 90 81.1
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 2.0e-36 156.8 97 78.4
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 2.0e-36 156.8 97 77.3
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.7e-36 156.4 88 83.0
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 4.6e-36 155.6 90 81.1
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 4.6e-36 155.6 90 82.2
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 4.6e-36 155.6 90 82.2
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 4.6e-36 155.6 90 82.2
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 4.6e-36 155.6 90 82.2
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 6.0e-36 155.2 90 83.3
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 6.0e-36 155.2 97 76.3
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 7.8e-36 154.8 90 82.2
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 7.8e-36 154.8 97 78.4
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 1.0e-35 154.5 97 77.3
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 1.0e-35 154.5 97 76.3
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 2.3e-35 153.3 88 81.8
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 2.3e-35 153.3 90 81.1
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 3.0e-35 152.9 90 82.2
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 3.9e-35 152.5 97 75.3
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 3.9e-35 152.5 97 75.3
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 5.0e-35 152.1 109 70.6
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 5.0e-35 152.1 97 76.3
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 6.6e-35 151.8 95 75.8
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 8.6e-35 151.4 90 78.9
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 8.6e-35 151.4 95 73.7
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 1.1e-34 151.0 90 80.0
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 1.1e-34 151.0 95 74.7
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 1.1e-34 151.0 97 72.2
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 1.5e-34 150.6 90 80.0
PGR004G0528 Punica granatum HOM05D001780 ORTHO05D005322 4.3e-34 149.1 91 79.1
TPR.G13840 Trifolium pratense HOM05D001780 ORTHO05D005322 4.3e-34 149.1 95 74.7
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 4.3e-34 149.1 97 73.2
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 9.5e-34 147.9 97 73.2
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 9.5e-34 147.9 90 78.9
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 1.6e-33 147.1 97 73.2
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 1.6e-33 147.1 88 79.5
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 2.1e-33 146.7 90 77.8
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 1.1e-32 144.4 90 77.8
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 1.8e-32 143.7 97 69.1
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 2.3e-32 143.3 104 65.4
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 2.3e-32 143.3 104 65.4
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 6.8e-32 141.7 97 71.1
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 1.5e-31 140.6 90 76.7
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 2.6e-31 139.8 90 76.7
CSS0032424 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 7.5e-31 138.3 97 71.1
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 9.8e-31 137.9 90 74.4
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 2.2e-30 136.7 90 73.3
MBI19_g29219_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 2.2e-30 136.7 90 74.4
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 2.9e-30 136.3 105 61.9
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 6.4e-30 135.2 97 69.1
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 1.1e-29 134.4 97 69.1
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 7.1e-29 131.7 90 71.1
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 1.2e-28 131.0 90 70.0
MELO3C006665.2 Cucumis melo HOM05D001780 ORTHO05D005322 1.6e-28 130.6 97 67.0
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 1.6e-28 130.6 97 67.0
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 2.7e-28 129.8 102 56.9
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 7.8e-28 128.3 100 68.0
BcaC07g37899 Brassica carinata HOM05D001780 ORTHO05D005322 1.7e-27 127.1 87 69.0
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 1.7e-27 127.1 112 55.4
Sc05g0003910 Simmondsia chinensis HOM05D001780 ORTHO05D005322 1.7e-27 127.1 72 87.5
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 3.9e-27 125.9 102 56.9
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 5.6e-26 122.1 90 70.0
COL.COLO4_04958 Corchorus olitorius HOM05D001780 ORTHO05D005322 6.8e-24 115.2 66 81.8
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 2.0e-23 113.6 97 56.7
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 3.2e-21 106.3 66 78.8
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 1.2e-20 104.4 105 51.4
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 6.0e-20 102.1 103 44.7
MD13G1254600 Malus domestica HOM05D001780 ORTHO05D005322 1.0e-19 101.3 91 59.3
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 5.6e-18 95.5 95 53.7
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 1.2e-17 94.4 102 48.0
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 2.8e-17 93.2 55 78.2
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 6.8e-16 88.6 55 72.7
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 1.3e-14 84.3 96 47.9
CBR_g29448 Chara braunii HOM05D001780 ORTHO05D005322 3.8e-14 82.8 80 47.5
Pp3s46_440 Physcomitrium patens HOM05D001780 ORTHO05D005322 6.4e-14 82.0 103 38.8
MCO13G360 Micromonas commoda HOM05D001780 ORTHO05D005322 6.0e-12 75.5 96 41.7
unitig_0.g2594 Utricularia gibba HOM05D001780 ORTHO05D005322 3.3e-10 69.7 90 45.6
CSS0049396 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 9.0e-08 61.6 34 82.4
HanXRQChr13g0411271 Helianthus annuus HOM05D001780 ORTHO05D005322 9.0e-08 61.6 78 46.2


User provided reference genes

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