Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 2.0e-71 272.3 139 100.0
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.1e-27 127.1 136 44.1
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.2e-26 123.6 131 48.9
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 4.4e-26 121.7 139 45.3
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 2.2e-25 119.4 129 46.5
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 3.7e-25 118.6 129 49.6
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.9e-25 118.2 129 43.4
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 8.4e-25 117.5 132 46.2
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 1.1e-24 117.1 134 46.3
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.1e-24 117.1 134 46.3
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.4e-24 116.7 129 43.4
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 1.9e-24 116.3 132 43.2
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.9e-24 116.3 132 45.5
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 4.1e-24 115.2 139 43.2
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 5.4e-24 114.8 129 45.7
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 7.1e-24 114.4 129 45.7
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 7.1e-24 114.4 129 46.5
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 9.2e-24 114.0 131 45.8
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 9.2e-24 114.0 129 42.6
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 1.6e-23 113.2 136 43.4
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.6e-23 113.2 129 45.0
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.6e-23 113.2 129 45.0
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.6e-23 113.2 130 44.6
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.1e-23 112.8 129 41.9
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 4.6e-23 111.7 131 45.8
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 4.6e-23 111.7 129 43.4
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 6.0e-23 111.3 128 45.3
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 6.0e-23 111.3 129 44.2
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 7.8e-23 110.9 130 42.3
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 1.3e-22 110.2 134 44.8
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.3e-22 110.2 129 45.0
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.7e-22 109.8 136 38.2
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 1.7e-22 109.8 129 44.2
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 2.3e-22 109.4 140 40.0
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 3.0e-22 109.0 134 41.8
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.9e-22 108.6 129 44.2
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.6e-22 107.8 132 45.5
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 6.6e-22 107.8 129 45.0
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 8.6e-22 107.5 132 42.4
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.1e-21 107.1 132 45.5
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 1.1e-21 107.1 130 42.3
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 1.5e-21 106.7 130 44.6
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 4.3e-21 105.1 129 38.0
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 4.3e-21 105.1 129 45.7
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 7.3e-21 104.4 132 44.7
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 1.2e-20 103.6 135 40.7
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.2e-20 103.6 133 40.6
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.1e-20 102.8 132 43.9
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 8.1e-20 100.9 129 40.3
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.1e-19 100.5 133 39.1
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.4e-19 100.1 130 40.0
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.8e-19 99.8 143 34.3
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 6.8e-19 97.8 72 61.1
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 6.8e-19 97.8 130 40.8
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 8.9e-19 97.4 135 37.8
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 8.9e-19 97.4 149 34.2
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 8.9e-19 97.4 134 40.3
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 8.9e-19 97.4 107 49.5
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.5e-18 96.7 72 59.7
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.5e-18 96.7 144 34.7
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.0e-18 96.3 74 58.1
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 2.6e-18 95.9 161 33.5
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 3.4e-18 95.5 72 58.3
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 7.6e-18 94.4 150 34.7
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-17 93.6 72 56.9
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 1.3e-17 93.6 72 56.9
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.3e-17 93.6 129 38.8
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 1.7e-17 93.2 130 40.0
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 1.7e-17 93.2 69 60.9
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 2.2e-17 92.8 152 38.8
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.2e-17 92.8 134 38.8
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.2e-17 92.8 130 38.5
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 2.9e-17 92.4 128 39.1
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 8.4e-17 90.9 130 36.9
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 8.4e-17 90.9 69 56.5
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-16 90.5 157 31.8
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.4e-16 90.1 117 42.7
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.9e-16 89.7 132 35.6
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 3.2e-16 89.0 72 54.2
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 3.2e-16 89.0 136 35.3
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 3.2e-16 89.0 129 36.4
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.4e-16 88.2 158 32.9
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.2e-15 87.0 72 51.4
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.2e-15 87.0 72 54.2
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 1.6e-15 86.7 72 52.8
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 2.1e-15 86.3 72 52.8
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 2.1e-15 86.3 72 52.8
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 2.1e-15 86.3 72 52.8
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 2.7e-15 85.9 71 54.9
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 2.7e-15 85.9 72 52.8
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 3.5e-15 85.5 72 51.4
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.5e-15 85.5 72 51.4
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 3.5e-15 85.5 72 51.4
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 3.5e-15 85.5 72 51.4
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 3.5e-15 85.5 72 51.4
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.6e-15 85.1 91 44.0
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.6e-15 85.1 72 54.2
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.0e-14 84.0 77 46.8
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.0e-14 84.0 72 54.2
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.3e-14 83.6 72 52.8
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.3e-14 83.6 75 53.3
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.3e-14 82.8 72 52.8
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.0e-14 82.4 102 45.1
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 3.0e-14 82.4 128 39.8
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 3.9e-14 82.0 109 38.5
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 8.7e-14 80.9 109 37.6
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 8.7e-14 80.9 128 39.1
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 1.1e-13 80.5 131 32.8
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.1e-13 80.5 71 52.1
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.1e-13 80.5 71 52.1
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.5e-13 80.1 88 43.2
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.5e-13 80.1 71 52.1
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.9e-13 79.7 159 30.2
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.3e-13 79.0 71 50.7
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 3.3e-13 79.0 171 29.2
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.6e-13 77.4 71 50.7
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.6e-13 77.4 67 49.3
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 1.3e-12 77.0 128 37.5
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 2.1e-12 76.3 131 32.8
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.6e-12 75.5 84 42.9
Phvul.007G052250 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 4.8e-12 75.1 80 42.5
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.2e-12 74.7 88 39.8
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 8.1e-12 74.3 71 49.3
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.1e-11 73.9 83 45.8
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-11 73.9 67 46.3
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 2.4e-11 72.8 126 34.1
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.9e-11 71.2 72 48.6
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 9.0e-11 70.9 64 50.0
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 9.0e-11 70.9 160 29.4
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.2e-10 70.5 70 50.0
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-10 70.1 72 44.4
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.0e-10 69.7 130 30.8
Medtr1g105515 Medicago truncatula HOM05D003286 ORTHO05D002463 2.6e-10 69.3 128 28.9
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 9.9e-10 67.4 158 31.0
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.7e-09 66.6 75 44.0
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.7e-09 66.6 75 44.0
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 1.7e-09 66.6 80 37.5
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 2.2e-09 66.2 62 53.2
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 2.9e-09 65.9 125 34.4
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.8e-09 65.5 72 44.4
Phvul.007G052200 Phaseolus vulgaris HOM05D003286 ORTHO05D050268 8.4e-09 64.3 74 45.9
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 1.9e-08 63.2 85 38.8
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 2.4e-08 62.8 85 37.6
Eucgr.D00805 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.4e-08 62.8 52 51.9
CARHR252270 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.2e-08 62.4 54 48.1
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 3.2e-08 62.4 131 32.8
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 3.2e-08 62.4 72 40.3
Ca_10982_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.4e-08 61.6 115 29.6
Ca_11002_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.4e-08 61.6 115 29.6
PSO017G6437 Papaver somniferum HOM05D003286 ORTHO05D002463 1.2e-07 60.5 135 28.9
Psat6g210240 Pisum sativum HOM05D003286 ORTHO05D002463 1.6e-07 60.1 81 35.8
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.1e-07 59.7 83 37.3
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 2.1e-07 59.7 72 40.3
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.7e-07 59.3 72 38.9
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.7e-07 59.3 108 29.6
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 2.7e-07 59.3 62 45.2
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 2.7e-07 59.3 121 28.9
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 3.5e-07 58.9 73 41.1
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 3.5e-07 58.9 73 41.1
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 3.5e-07 58.9 71 38.0
CAN.G921.12 Capsicum annuum HOM05D007466 ORTHO05D002463 7.9e-07 57.8 124 30.6
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 1.0e-06 57.4 127 31.5
TPR.G4193 Trifolium pratense HOM05D007466 ORTHO05D002463 1.0e-06 57.4 118 31.4
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.3e-06 57.0 68 39.7
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.7e-06 56.6 128 25.0
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.7e-06 56.6 128 25.0
TWI36G1433 Tripterygium wilfordii HOM05D007466 ORTHO05D002463 2.3e-06 56.2 114 31.6
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 3.0e-06 55.8 63 42.9
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 3.0e-06 55.8 63 42.9
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 3.0e-06 55.8 63 42.9
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 3.0e-06 55.8 73 38.4
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 3.9e-06 55.5 75 40.0
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.9e-06 55.5 46 56.5
RcHm_v2.0_Chr1g0359161 Rosa chinensis HOM05D000218 ORTHO05D000125 3.9e-06 55.5 89 33.7
VMungo0720G0763 Vigna mungo HOM05D035721 ORTHO05D050290 3.9e-06 55.5 67 40.3
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.7e-06 54.3 69 33.3
PSO017G4339 Papaver somniferum HOM05D003286 ORTHO05D002463 8.7e-06 54.3 73 39.7


User provided reference genes

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