Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 5.4e-281 970.3 482 100.0
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 2.0e-214 749.2 465 77.4
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.3e-205 717.6 468 72.9
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.8e-204 716.1 468 72.6
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 8.9e-199 697.2 466 71.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 9.8e-198 693.7 468 71.6
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.3e-197 693.3 462 71.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.7e-197 693.0 528 65.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.7e-197 691.8 462 71.0
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 2.7e-195 685.6 462 71.2
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 4.5e-195 684.9 462 70.1
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.0e-194 683.7 462 69.7
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.3e-194 683.3 462 71.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 5.0e-194 681.4 462 70.1
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 6.6e-194 681.0 493 67.1
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 4.3e-193 678.3 462 69.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 5.6e-193 677.9 463 69.3
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 3.6e-192 675.2 461 68.1
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 4.7e-192 674.9 462 69.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.8e-191 672.9 464 67.5
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.0e-191 671.8 462 68.6
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.0e-190 669.5 463 70.4
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 3.4e-190 668.7 462 68.2
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.8e-190 667.9 462 69.5
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.3e-189 666.8 462 70.1
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.3e-189 666.8 464 69.6
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.2e-189 666.0 462 69.0
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 2.9e-189 665.6 462 69.7
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 6.4e-189 664.5 462 69.7
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 6.4e-189 664.5 462 69.7
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 6.4e-189 664.5 462 69.5
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 8.3e-189 664.1 467 66.2
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 8.3e-189 664.1 462 67.3
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.1e-188 663.7 463 66.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.9e-188 662.9 462 69.3
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 3.2e-188 662.1 462 69.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 4.1e-188 661.8 462 69.5
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 5.4e-188 661.4 462 68.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.0e-188 661.0 462 68.2
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 2.7e-187 659.1 462 67.3
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 2.7e-187 659.1 462 68.2
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 3.5e-187 658.7 462 68.8
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 4.6e-187 658.3 462 69.3
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.3e-186 656.8 462 68.0
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 6.6e-186 654.4 462 67.5
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 6.6e-186 654.4 462 67.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.5e-185 653.3 480 67.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 1.5e-185 653.3 462 68.2
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.9e-185 652.9 462 66.7
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 2.5e-185 652.5 464 65.9
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 3.3e-185 652.1 462 68.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 5.6e-185 651.4 455 69.0
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 9.5e-185 650.6 462 68.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.6e-184 649.8 463 65.2
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.1e-184 649.4 462 66.9
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 3.6e-184 648.7 462 67.5
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 6.2e-184 647.9 463 65.0
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.8e-183 646.4 462 65.8
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 6.8e-183 644.4 466 65.2
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 8.9e-183 644.0 462 66.0
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.2e-182 643.7 467 64.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.2e-182 643.7 462 65.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.5e-182 643.3 461 65.7
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 7.5e-182 641.0 483 64.0
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.7e-181 639.8 465 67.7
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 6.4e-181 637.9 462 64.5
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.4e-180 636.7 504 61.7
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 3.2e-180 635.6 462 65.8
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 8.6e-178 627.5 462 64.5
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.5e-177 626.7 460 66.3
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.5e-177 625.9 462 64.7
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 5.6e-177 624.8 477 62.5
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 5.2e-175 618.2 461 66.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 4.9e-173 611.7 462 61.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.5e-169 600.1 462 64.9
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 3.6e-168 595.5 462 60.6
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.4e-166 589.0 463 64.4
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 7.6e-166 587.8 531 56.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.4e-164 583.6 470 60.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.4e-159 566.2 401 67.8
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 3.1e-159 565.8 406 65.5
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.2e-158 563.9 402 68.9
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 2.6e-158 562.8 462 58.2
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.2e-149 533.1 475 56.4
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.3e-146 523.9 465 56.8
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.6e-144 516.9 349 71.1
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 3.8e-141 505.8 352 65.9
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 8.4e-133 478.0 322 69.3
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.5e-129 466.5 465 48.2
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 7.4e-129 464.9 461 50.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.7e-128 462.6 471 52.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.2e-125 453.4 457 49.5
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.0e-122 443.0 461 47.5
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 3.3e-113 412.9 296 65.9
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 4.4e-113 412.5 356 57.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.0e-105 387.1 266 69.5
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.4e-103 380.2 270 67.0
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.1e-103 379.4 406 48.5
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 5.2e-98 362.5 238 71.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 9.1e-95 351.7 247 63.6
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 5.5e-92 342.4 265 63.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.6e-83 313.2 462 41.6
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 4.3e-76 289.7 378 44.7
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.5e-73 281.2 494 37.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.4e-73 280.0 196 66.3
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.4e-73 280.0 250 58.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.2e-62 245.0 447 34.7
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 4.7e-59 233.0 374 39.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 1.5e-52 211.5 140 70.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.1e-51 207.6 447 35.3
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 6.0e-46 189.5 122 74.6
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.6e-43 181.4 515 28.2
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.8e-34 151.4 482 27.0
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 2.9e-32 144.1 101 64.4
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.1e-30 137.9 85 71.8
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.6e-27 128.3 96 62.5
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.8e-24 117.1 84 65.5
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.4e-20 102.8 175 38.3
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.3e-19 102.1 105 49.5
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-19 100.5 112 46.4
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 4.8e-19 100.1 82 59.8
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 5.8e-17 93.2 54 75.9
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.2e-16 91.3 121 41.3
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.0e-16 90.1 124 40.3
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.5e-16 89.7 120 40.8
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 9.3e-15 85.9 436 24.8
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.7e-11 73.9 54 64.8
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 5.9e-09 66.6 46 69.6
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 9.4e-07 59.3 42 71.4


User provided reference genes

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