Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001980 Simmondsia chinensis HOM05D003402 ORTHO05D003939 5.8e-36 153.7 76 100.0
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 2.8e-22 108.2 76 68.4
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 3.6e-22 107.8 76 68.4
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 4.7e-22 107.5 81 64.2
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 8.1e-22 106.7 81 64.2
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 1.1e-21 106.3 81 65.4
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 1.4e-21 105.9 81 66.7
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 1.8e-21 105.5 81 64.2
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.8e-21 105.5 81 64.2
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 2.3e-21 105.1 76 64.5
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 2.3e-21 105.1 75 68.0
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 2.3e-21 105.1 79 64.6
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 4.0e-21 104.4 79 64.6
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 4.0e-21 104.4 77 66.2
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 6.8e-21 103.6 77 64.9
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 6.8e-21 103.6 76 65.8
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 6.8e-21 103.6 81 64.2
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 6.8e-21 103.6 77 64.9
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 6.8e-21 103.6 81 65.4
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 8.9e-21 103.2 76 64.5
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 8.9e-21 103.2 81 65.4
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 8.9e-21 103.2 81 64.2
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 1.2e-20 102.8 77 66.2
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.2e-20 102.8 81 63.0
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 1.2e-20 102.8 77 66.2
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 1.5e-20 102.4 81 61.7
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 1.5e-20 102.4 77 64.9
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 1.5e-20 102.4 81 60.5
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 1.5e-20 102.4 75 65.3
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 1.5e-20 102.4 76 65.8
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 2.0e-20 102.1 80 63.8
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 2.0e-20 102.1 81 64.2
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 2.6e-20 101.7 75 62.7
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 2.6e-20 101.7 75 62.7
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 3.4e-20 101.3 75 62.7
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 3.4e-20 101.3 76 64.5
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 3.4e-20 101.3 77 62.3
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 3.4e-20 101.3 78 62.8
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 3.4e-20 101.3 80 62.5
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 4.4e-20 100.9 81 60.5
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 5.8e-20 100.5 81 60.5
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 5.8e-20 100.5 77 61.0
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 5.8e-20 100.5 65 69.2
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 7.5e-20 100.1 77 61.0
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 7.5e-20 100.1 75 64.0
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 7.5e-20 100.1 77 61.0
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 9.9e-20 99.8 80 62.5
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 9.9e-20 99.8 81 59.3
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 9.9e-20 99.8 81 61.7
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 1.3e-19 99.4 77 62.3
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 1.3e-19 99.4 81 58.0
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 1.3e-19 99.4 81 59.3
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 1.3e-19 99.4 76 64.5
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.3e-19 99.4 81 60.5
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 1.3e-19 99.4 77 59.7
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 1.7e-19 99.0 77 62.3
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.7e-19 99.0 81 59.3
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 1.7e-19 99.0 81 61.7
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 2.2e-19 98.6 76 61.8
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 2.2e-19 98.6 75 61.3
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 2.2e-19 98.6 81 59.3
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 2.2e-19 98.6 81 61.7
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 2.2e-19 98.6 66 65.2
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 2.2e-19 98.6 81 56.8
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.9e-19 98.2 77 63.6
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 2.9e-19 98.2 75 60.0
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 2.9e-19 98.2 62 72.6
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 2.9e-19 98.2 77 59.7
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 2.9e-19 98.2 64 67.2
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 3.7e-19 97.8 68 66.2
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 3.7e-19 97.8 78 61.5
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 3.7e-19 97.8 83 57.8
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 3.7e-19 97.8 81 61.7
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 3.7e-19 97.8 81 60.5
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 4.9e-19 97.4 76 63.2
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 4.9e-19 97.4 76 63.2
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 4.9e-19 97.4 76 63.2
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 4.9e-19 97.4 77 62.3
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 4.9e-19 97.4 70 65.7
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 4.9e-19 97.4 63 69.8
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 4.9e-19 97.4 76 63.2
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 4.9e-19 97.4 76 63.2
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 6.4e-19 97.1 68 61.8
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 6.4e-19 97.1 62 72.6
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 6.4e-19 97.1 81 60.5
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 6.4e-19 97.1 81 56.8
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 6.4e-19 97.1 81 56.8
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 6.4e-19 97.1 81 56.8
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 6.4e-19 97.1 84 58.3
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 6.4e-19 97.1 80 58.8
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 6.4e-19 97.1 81 61.7
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 6.4e-19 97.1 77 59.7
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 8.3e-19 96.7 75 62.7
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 8.3e-19 96.7 81 60.5
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 8.3e-19 96.7 77 57.1
MBI16_g24676_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 8.3e-19 96.7 81 56.8
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 8.3e-19 96.7 80 58.8
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 8.3e-19 96.7 81 59.3
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 8.3e-19 96.7 81 56.8
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 8.3e-19 96.7 75 60.0
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 1.1e-18 96.3 81 55.6
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 1.1e-18 96.3 62 71.0
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 1.1e-18 96.3 75 64.0
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 1.1e-18 96.3 80 58.8
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.4e-18 95.9 77 61.0
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.4e-18 95.9 62 67.7
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.9e-18 95.5 81 58.0
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 1.9e-18 95.5 77 55.8
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 2.4e-18 95.1 81 59.3
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 2.4e-18 95.1 81 58.0
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 2.4e-18 95.1 62 67.7
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 2.4e-18 95.1 65 64.6
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 2.4e-18 95.1 65 64.6
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 2.4e-18 95.1 76 59.2
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 3.2e-18 94.7 77 62.3
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 4.1e-18 94.4 76 59.2
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 4.1e-18 94.4 76 59.2
CDE10G1248 Ceratophyllum demersum HOM05D003402 ORTHO05D003939 4.1e-18 94.4 71 62.0
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 4.1e-18 94.4 81 58.0
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 4.1e-18 94.4 77 55.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 5.4e-18 94.0 78 57.7
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 5.4e-18 94.0 75 58.7
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 9.2e-18 93.2 81 54.3
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 9.2e-18 93.2 77 61.0
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 1.2e-17 92.8 79 57.0
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 1.2e-17 92.8 77 55.8
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 1.6e-17 92.4 76 60.5
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.6e-17 92.4 81 61.7
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 2.1e-17 92.0 79 58.2
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 2.1e-17 92.0 81 56.8
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 4.6e-17 90.9 76 56.6
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 4.6e-17 90.9 65 63.1
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 6.0e-17 90.5 81 53.1
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 7.8e-17 90.1 68 57.4
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 1.3e-16 89.4 62 62.9
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 2.3e-16 88.6 81 53.1
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 3.0e-16 88.2 60 65.0
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.9e-16 87.8 80 58.8
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 1.5e-15 85.9 64 59.4
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 2.5e-15 85.1 83 51.8
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 2.5e-15 85.1 82 52.4
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 3.3e-15 84.7 63 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 4.3e-15 84.3 63 60.3
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 5.6e-15 84.0 63 58.7
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 7.3e-15 83.6 66 53.0
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 1.2e-14 82.8 77 57.1
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 2.8e-14 81.6 78 52.6
AUR62033193 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.6e-14 81.3 80 53.8
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 3.6e-14 81.3 76 55.3
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 3.6e-14 81.3 76 55.3
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 8.1e-14 80.1 72 52.8
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 1.8e-13 79.0 62 58.1
ATR0686G089 Amborella trichopoda HOM05D003402 ORTHO05D003939 4.0e-13 77.8 72 51.4
Glyma.08G337300 Glycine max HOM05D003402 ORTHO05D003939 4.0e-13 77.8 62 54.8
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 5.2e-13 77.4 62 54.8
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 6.8e-13 77.0 81 54.3
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 8.9e-13 76.6 62 56.5
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 8.9e-13 76.6 62 56.5
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 1.5e-12 75.9 75 49.3
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 2.0e-12 75.5 75 49.3
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 2.6e-12 75.1 54 61.1
BcaB06g25477 Brassica carinata HOM05D003402 ORTHO05D003939 2.2e-11 72.0 52 61.5
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 3.8e-11 71.2 51 68.6
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 6.4e-11 70.5 62 50.0
Zm00001eb138570 Zea mays HOM05D003402 ORTHO05D003939 7.1e-10 67.0 69 46.4
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 1.6e-09 65.9 46 65.2
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 2.1e-09 65.5 67 47.8
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 2.1e-09 65.5 73 43.8
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 2.7e-09 65.1 69 43.5
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.0e-09 63.9 67 49.3
AUR62043565 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.0e-09 63.9 67 49.3
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 2.3e-08 62.0 75 44.0
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 5.1e-08 60.8 67 44.8
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 5.6e-07 57.4 69 46.4
Hund02357 Selenicereus undatus HOM05D003402 ORTHO05D003939 2.1e-06 55.5 64 43.8


User provided reference genes

Program Settings